LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere14g0459	ATGGGGAGGCCACCTTGCTGTGACAAAACTGGGGTTAAGAAAGGGCCTTGGACTCCTGAAGAAGACATCATCTTGGTCTCTTACATTCAAGAACACGGTCCTGGCAATTGGAGATCAGTTCCCTCTAATACAGGTCTGATGAGATGCAGTAAAAGCTGCAGACTTAGATGGACCAACTATCTCCGGCCCGGTATTAAAAGAGGCAACTTCACCGATCATGAGGAGAAGATGATAATCCATCTCCAAGCTCTTCTGGGGAACAGATGGGCTGCTATAGCTTCGTATCTTCCTCAGAGGACAGACAATGACATAAAGAACTACTGGAATACCCATTTGAAGAAGAAGCTGAAGAAGCTTCAAACTGGAACAGACGGTGATGACCAAGAGAATTGCTCAGCTTCCCATCCAAAGGGCCAGTGGGAGAGAAGGCTTCAAACAGACATCCACATGGCCAAACAAGCCCTGCGTGAGGCTCTGTCCCTTCACAATCCATCCGAAACCAGTAATAGTAATAGTAAGCCCTCCAGTTCCTCAATCCAAACATCCCCATACGCATCGAGCACCGAGAACATAGCTCGATTGCTCCAGAACTGGATGAACAAGTCCCCTGTTAACTCCGCAGACTCCACCTCTGGACCTTCCTTCAGCAACATGGTCACAACAGGTTCCACTTCCTCTAGCGAAGCAGGAGCACCTTATAATAACAATAACAATAATAATGCTCTGGATTCGCTGTGGACCTTCAACTCCTCCATGAACTCTGATGCCTCCCAATCCCAATCTATGTCTCTGGACGACAACACCAATACCAGCTTGTTCCAAGACGAGAGCAAGCCAATCTTGGAGTCGCAACTCCCTCTGACGTTAATAGAGAAATGGCTGTTCGATGATGGGGTACCTCAAGGCCAAGAAGATCTAATCAACATGCCACTACTGCAAGAAACTACGCCACTGTTGTTTTAG	963	0.4746	MGRPPCCDKTGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPSNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGTDGDDQENCSASHPKGQWERRLQTDIHMAKQALREALSLHNPSETSNSNSKPSSSSIQTSPYASSTENIARLLQNWMNKSPVNSADSTSGPSFSNMVTTGSTSSSEAGAPYNNNNNNNALDSLWTFNSSMNSDASQSQSMSLDDNTNTSLFQDESKPILESQLPLTLIEKWLFDDGVPQGQEDLINMPLLQETTPLLF	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere14g0459	320	MobiDBLite	consensus disorder prediction	202	238	-	-
	Dere14g0459	320	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	65	IPR017930	-
	Dere14g0459	320	CDD	SANT	16	61	IPR001005	-
	Dere14g0459	320	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	243	-	-
	Dere14g0459	320	SMART	sant	13	63	IPR001005	-
	Dere14g0459	320	SMART	sant	66	114	IPR001005	-
	Dere14g0459	320	FunFam	MYB-related transcription factor	13	66	-	-
	Dere14g0459	320	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Dere14g0459	320	CDD	SANT	69	111	IPR001005	-
	Dere14g0459	320	FunFam	Transcription factor MYB30	68	126	-	-
	Dere14g0459	320	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Dere14g0459	320	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Dere14g0459	320	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Dere14g0459	320	Gene3D	-	68	171	-	-
	Dere14g0459	320	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	116	IPR017930	-
	Dere14g0459	320	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Dere14g0459	320	Gene3D	-	13	66	-	-
	Dere14g0459	320	MobiDBLite	consensus disorder prediction	162	185	-	-
	Dere14g0459	320	MobiDBLite	consensus disorder prediction	119	140	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere14g0459	Dere-ChrDere14	4778568	4779760	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere14g0459	1	297	MYB Transcription Factor Family	AT5G62470	52.464	2.74e-106	312

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere14g0459		Myb_DNA-binding	5.7e-15	CL0123