Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0446 ATGTCTGCTGTTACCTTGTCTTCTAGCTCTGCTTTCGTTGTGGGTTTTTATCTCCCCTTCGATTTCAAGGTTCAAATTGTGCGTGACAGGATGGGAAGAGTTAAACTAAAGATAAAGAAATTAGAGAGCATTAGCAACCGTCAAGTGACTTTTTCAAAGCGAAAGAGTGGAATATTAAAGAAAGCCAAGGAATTATCAATATTATGTGATATAGACATTGCCCTTCTCATGTTTTCTCCGACAGGAAAGCCTATATTACTACAAGGAGAGCGCAGCAATATCGAGGAGGTCATTGAAAAGTTTGCTCAATTAAGCCCACAAGAAAGGGCCAAAAGGAAATTGGAAAGCCTTGAAGCACTGAGGAAAACCTTCAAGAAGTTGGACCATGACGTAAAAATAAAAGATTTCTTGGGTTCAAGCAGTCAACAAGTGGAGGAATTAACTCATCACGTAAGGGTGTTACAAGCTCAGCTTACAGAAGTGCATCAGAGACTGAGCTATTGGAGTAATCTAGAGAAGATCAATAATGTAGAACATCTTAGGCAAATGGAAGACTCACTAAAGGAATCAATTAATCGAATACGTCTGCAGAAGGAAAATTTGGGAAAACACCAGCTAATGTCACTTGAATGCGCTAACCAGTTACAGGAAGGGATAACTTTACCCCTGATGATGGCTGGTCTGCAAGAAGCCCAACCCCTGTCTTGGCTTTTGAATAACGATAACAATCAGTTGATTTTACCTAGTGAACCAAAATTTCTGCCATTTAGTGATAATCCCAATAGAGAGGCTGAGTGCTCCACTAACGTTTCACTGCCTGGCTATTCTGGTTATATTAGCAGTAGTAAAGTTGAGGTTGGCAACTCACCTCAGGTTGGTACTTTGGGTCAGGGTGGTGGTACCTTGAATGAGTTTAACGAAACTGCCTGCTTAAATGCACAACGTTGTGAGCAGTTTTCGTACCCTCCACCACCAGATAATGATGAAACGAAGCATCATCCAGTTATGAACAGTAAACCAAACCCTGTGGATTATCAAGTTAATAGCAGTTATGATCTGCCTAGATCAATCTTTGAAAATGGACATCAGTTCTGGAATTCTAGTTCTGCAACTTGTGGCATTGCCATGTATAATGAGAATGGTTACCATCAGTAA 1155 0.4043 MSAVTLSSSSAFVVGFYLPFDFKVQIVRDRMGRVKLKIKKLESISNRQVTFSKRKSGILKKAKELSILCDIDIALLMFSPTGKPILLQGERSNIEEVIEKFAQLSPQERAKRKLESLEALRKTFKKLDHDVKIKDFLGSSSQQVEELTHHVRVLQAQLTEVHQRLSYWSNLEKINNVEHLRQMEDSLKESINRIRLQKENLGKHQLMSLECANQLQEGITLPLMMAGLQEAQPLSWLLNNDNNQLILPSEPKFLPFSDNPNREAECSTNVSLPGYSGYISSSKVEVGNSPQVGTLGQGGGTLNEFNETACLNAQRCEQFSYPPPPDNDETKHHPVMNSKPNPVDYQVNSSYDLPRSIFENGHQFWNSSSATCGIAMYNENGYHQ 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0446 384 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Dere14g0446 384 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Dere14g0446 384 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
Dere14g0446 384 Coils Coil 107 127 - -
Dere14g0446 384 PANTHER SERUM RESPONSE FACTOR HOMOLOG 33 245 - -
Dere14g0446 384 ProSiteProfiles MADS-box domain profile. 31 83 IPR002100 GO:0003677|GO:0046983
Dere14g0446 384 SUPERFAMILY SRF-like 32 125 IPR036879 GO:0003677|GO:0046983
Dere14g0446 384 Coils Coil 180 200 - -
Dere14g0446 384 Gene3D - 44 126 IPR036879 GO:0003677|GO:0046983
Dere14g0446 384 FunFam Agamous-like MADS-box protein AGL30 44 126 - -
Dere14g0446 384 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 41 84 IPR002100 GO:0003677|GO:0046983
Dere14g0446 384 MobiDBLite consensus disorder prediction 318 344 - -
Dere14g0446 384 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0446 Dere-ChrDere14 4623995 4628844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0446 31 306 Type I MADS-box Gene Family AT2G03060 50.175 1.74e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere14g0446 SRF-TF 5.6e-21 No_clan