Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0430 ATGGCGGGGGAATCGGCTTCTTCTTCAGCTGTGCTCACCATGGACGGTCTTGACGATGTGGAGAACTACGTTTGGGCAAATGAACAAGAAGGTTTGGCATGGGACACATACCATCATGTTTTTGAACTTGTGCATAATGGCAACATGTCATTCCGGGAGAACAGGATTGAAGAGGCAATCAAATTTTACTCAAGAGCAAATAGCATCAAATCTGGTGATCCTGTTATCCTCAGCAACCGGTGTGCAGCTTATCTTAGGATTAGCAAAATTTTAAAGCTCAGATCTCCATCAGTTTCAGAATATAAACCATTGAGTGGACTTGATCCTACAATACATGCTGAACTTGGTTTGAAGGATGCTGAGAGGCTTGTTGACCTGCGAAGTAATTCAGTAAAATCATACCTCTTAAAGGCTAATGCGCTTTTTCTGTTAGAGAAATATGAAAAGGCCCGGGATGTTATTCTTTCAGGCCTTCAAGTTGATCCATTTAGTGATTCTCTGCGGGCTTCACTTAAAAATTTGGAAAGAGCATCATCTAGTCTGGTGGGGATAAGAACACATGGACAACCAGAGCGCACTGATGACTTTGATTGCACTATTTGCCTGAAGTTGCTGTATGAACCTGTTACAACCCCTTGTGGGCATTCTTTTTGCCGTTCATGTCTATTTCAGTCAATGGATCGTGGCAACAGATGCCCATTGTGCAGGACTGTTCTTTTTATCAGTCCTAGAACGTGCTCAATCAGTGTGACATTGAAGAGCATCATACAAAAGAACTTTCCAGAGGAATATGCTGAAAGGAAGCAAGAGCATGACAGTTTGACCAACTTTGATGTAGATTTGGTTCCTCTTTTTGTAATGGATGTTGTCATTCCATGTCAAAAGTTTCCACTCAATATATTTGAACCTCGATATAGACTTATGGTCAGAAGAATTATGGAAGGGAATCATAGAATGGGAATGGCTATAATCGATTCTACAACAGGTTCCCTAGCTGAGTTTGCTTGTGAAGTGGAAATCACAGAGTGTGAACCACTTCCAGATGGACGTTTCTATATAGAGATTGAAAGTTGCAGGAGATTTCGCATCATCCGATCTTGGGACCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATACAGGATATTATGCCTCCAGAAGGGACTATAGAGAGACAGTGTTTACAGGAAGTGACATATAATGCAGCCGAAACTGCTCAAACGTGGATAAGAAGAGCTAAAGAGGCAGCGAGAGCAAGACAAGATCATCGAAGACTTGAGAGAATCCAATCTGTTGAAGCGATGATGCCCAGTCTTAGAGATCCAGAGAGCTTCAGTTTCTGGCTTGCTTCCTTGTCAAAGCGGAGGCCCTCAGAAAGACTGGATCTCCTACGCTTAAGAGATACCAAAGAGAGGATTAGACGTGGACTGATATACCTCAGAGCAGAGGAACCATGCTGCAGAAGGCAATAA 1473 0.427 MAGESASSSAVLTMDGLDDVENYVWANEQEGLAWDTYHHVFELVHNGNMSFRENRIEEAIKFYSRANSIKSGDPVILSNRCAAYLRISKILKLRSPSVSEYKPLSGLDPTIHAELGLKDAERLVDLRSNSVKSYLLKANALFLLEKYEKARDVILSGLQVDPFSDSLRASLKNLERASSSLVGIRTHGQPERTDDFDCTICLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKSIIQKNFPEEYAERKQEHDSLTNFDVDLVPLFVMDVVIPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMAIIDSTTGSLAEFACEVEITECEPLPDGRFYIEIESCRRFRIIRSWDQDGYRVAEVEWIQDIMPPEGTIERQCLQEVTYNAAETAQTWIRRAKEAARARQDHRRLERIQSVEAMMPSLRDPESFSFWLASLSKRRPSERLDLLRLRDTKERIRRGLIYLRAEEPCCRRQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0430 490 ProSiteProfiles Zinc finger RING-type profile. 198 236 IPR001841 -
Dere14g0430 490 ProSiteProfiles Lon N-terminal domain profile. 279 482 IPR003111 -
Dere14g0430 490 Gene3D - 281 382 IPR046336 -
Dere14g0430 490 Gene3D Tetratricopeptide repeat domain 39 177 IPR011990 GO:0005515
Dere14g0430 490 SMART lon_5 281 482 IPR003111 -
Dere14g0430 490 Pfam ATP-dependent protease La (LON) substrate-binding domain 282 480 IPR003111 -
Dere14g0430 490 SUPERFAMILY TPR-like 40 171 IPR011990 GO:0005515
Dere14g0430 490 PANTHER RING FINGER PROTEIN 127 30 481 - -
Dere14g0430 490 SMART ring_2 198 235 IPR001841 -
Dere14g0430 490 SMART tpr_5 40 73 IPR019734 GO:0005515
Dere14g0430 490 SMART tpr_5 131 164 IPR019734 GO:0005515
Dere14g0430 490 SUPERFAMILY PUA domain-like 282 480 IPR015947 -
Dere14g0430 490 Gene3D - 417 482 - -
Dere14g0430 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 279 IPR013083 -
Dere14g0430 490 Pfam Zinc finger, C3HC4 type (RING finger) 198 235 - -
Dere14g0430 490 CDD RING-HC_LONFs_rpt2 195 239 - -
Dere14g0430 490 ProSitePatterns Zinc finger RING-type signature. 213 222 IPR017907 -
Dere14g0430 490 SUPERFAMILY RING/U-box 192 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0430 Dere-ChrDere14 4530057 4538821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0430 186 239 C3H Transcription Factor Family AT1G74990 36.842 7.34e-10 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere14g0430 14 4530057 4538821 Dere14g0430 14 4530057 4538821 ECH