Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0413 ATGGAAATCACGGAAGAACAGAGAAAACGAGCCGAAGCGAACCGTTTAGCGGCCATTGCAAGACGAAAGGCATTGTTTGAAGCTCAGGAACAGAAAGAACCTTGTCAGCTCTTAAAGTGCCGTAAGATCTCTCCCGAACTCAATACCAAGCCCAGACCCACTATTCTTCTACCCGAACAACCCCAATCCGTCTCCGTTGAAACCGTTTCTCCCAAACCCCGGCCCCCTAAGTTTTTGGTTAGGCTCGAAATATGCTCTCCCGATTTCTTCTCTGCAACCCCACGTTTTCTACAGGGTTTTCCGTATCCCGGGGAAGAACGGTGCTTGCAGAGACTAAGTGAGTCTTTGTCCGATGTCATGCCTTCACACTACACCCAGAATCACAGTGGTGGAAAGGCCTGTGTGTATAAGTTAGGGGATTACAGTGCTGTCCTCAAATGTTTGAAGATTGCCACGGACATAAAAGTTGAAGAAATTCCATGGGGAACTCTTAACGTCGTTGAGACGCTTTCACATTCCTTTGCTGCAAACCGCTGGATACCCTGCAGGCCTGAGCACTTGTCTGATGACAAGGTTGATGAGTTGATTGGGAAGCTACCAAGAATTTTGTGGGATGCATTGTTACCTTTCCAAAGGGATGGTTTAAGATTTGGTTTGAGAAGGGGTGGGCGGTGTCTTATTGCAGACGAGATGGGCCTTGGGAAAACACTCCAGGCAATTGCTATTGCAGGATGTTTCTTGAACGAAGGTTCTATACTTGTTGTTTGTCCAGCTGTTTTGCGTTTTACATGGGCAGAAGAATTAGAGCGTTGGCTTCCTTGTTGTTTGCCTGCTGATATCCATCTCGTCTTTGGCCATCGAGATAATCCTGCATATTTAAGAAGATGCCCTAGAGTTGTGGTTATTTCTTATACCATGCTCCATCGTTTGAGGAAGAGCATGCTTGAGCGAGAATGGGCTCTCTTGATTGTTGATGAATCTCATCATGTGCGATGTACGAAAAGGACCTCAGAACCAGGGGAGATAAAGGCTGTTCTTGATGTTGCTTCAAAAGTCAAGCGCATAATACTATTGTCTGGGACACCTTCATTGTCAAGACCGTTTGACATATTTCATCAGATAAACATGTTATGGCCTGGACTGCTGGGGAAGAATAAATATGAGTTTGCAAAAACTTATTGTGATTTTAAATATATCAAGGGAATCCAAGGCAAATTATTTGCGGACTTTTCGAAGGGCATTCGCTTAGAGGAATTGAATGTGTTACTAAAGCAAACTGTTATGATAAGGCGTTTGAAGGAGCATGTGCTGTTGCAATTACCGCCAAAACGGCGGCAAATTATATGGTTGTTGTTGAAGAGATCAGATGTAATTGCTGCTAAAACAGCAGTTGGAAAGTTGAATGGCAATACTTCCAAAAGTGCCACTGAAGAAATGACTTCTGACAGCTTGGATCCACCAGATGGGGTGTTGTGGAAGAGATCAGATGTAGTTGCTGCGCAAACTGCAGTTGTGAATACCAATACTTCCAACAGTGGCACTGAAGACATGACTTTGGAAAGTTTGTATGAATCTGATGGGAAGCTCTCCTACCAGGAACTTGGAATTGCAAAGCTTTCTGGATTTTGTGAATGGCTTTCCCTCCATCCAGTTGTTGCAGAGTCAGAAAATGCTTCAAAAATGATAATTTTTGCTCATCACCATAAAGCTCTTGATGGAGTGCAGGAGTTTGTATGTGAGAAAGGGATTGGTTTTATCCGAATCGATGGAAATACACTTGCTAGGGATAGGCGGTCAGCTGTGGTGTCATTTCAATCAAGACCAGAGGTTAAAATTGCAATAATAGGTATTTTAGCAGCAGGATTTGGACTTGATTTCTCATCAGCACAAAACGTTGTGTTCTTGGAGCTTCCTCGGTGCCCGTCTCTGATGCTTCAGGCTGAGGATCGAGCTCACCGACGAGGGCAAACAAATGCAGTCAATGTACACATCTTTTGTGCGAAGGATACCTTGGATGAGTCACACTGGAAAAATTTGAACAAAAGTTTGCACCGCGTTTCATCTACAACAGATGGTAAATATGATGCAGTGAAAGAGATACAGGTTGAAGGTGTTTCTTACTTGGACACACATGTCAAAACTGATAGTAGTATTGAAGAGCAATCTGCATCCAATGAAACTTCTGAACAGGCTGATAAGGTTTCCTGGCCAGAATCAGGCGAGGCTTCTATTTTGGATGGAAACTTAGATGTAGATGTTTTTGACACCAAGGAAAGATGCTCTGATATGGATTTGGATAGAGGTGGCGGAATCAAATATCAGAATACAGACTTCATTCAAAAGAACCATGGTGAAGATGATCAAGTAGATGAGAATGAAAAATCATCCCCAACAATAGAGGTTGATGACTACCAACCTATTCAGCAAATTGAAGCTGATGAAAATTCTTCTAGTCAAGTTGAATCTCTCCGATTTGAAGTTAGTCCATACACTGGAAGGATCCACTTGTATACTTGCATTTTGGGTGAAGATACAAGACCAAGACCACTATTTGAAAATTTTAGACCTGAGGAACTTGAGTGGCTAAGTTCCCTTGCTGATGATGATGAAAAGAAAAAGGATATTTCCATCAAGGACAATCCTGCTTATACACGTGCGCTTTTGGAATTTTTAAATGAATGGAAGAAATTAAGGCCAATTGAGCGTAAGAAGTTACTGGGAAAACCATTACAACTTCCGTTGGCTGCTGAATTGTGCTACTTGAGTGAAAGTAATAGCCACAACAACAAGGGATTATTAAATGGTGGAAGTAAACGACGCATGACGCCTTTAGTGGAGATTAGCCATCCTTTACCATCAGATGCTGTTTGGAAAAAGATCTATCTGCGAAGTGGCAATGGTAAGAAGGAGAAAGAATACACTCAAGGTTGGACTCTGACAGATGAACCACTCTGTAAGCTTTGTCAAAAGACATGCATGGGCAACAATGCCAAGACACCTGATTATTTTGAAGATCTTTTCTGTAACCTTGTCTGCTATGAAGAGTATCGCATGAGAACAAGCAACAAATTCCTTCGTCAGCTTGAGATGATCCAGGAACTTTTCGAAATTGAAAATGGTGTATGCTCAATTTGCCATTTAGACTGTCATAAACTGGTTGAGCATATAAGACCTTTGTCATTGGCAAGTCGACAAGAGTACATAGAGAAAGTGGCACCAAAAGTGGCTAAGCGAAAGAACATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCATGGCATGCAGATCATATTGTTCCAGTATATCAAGGCGGCGGTGAATGTAGACTGGAGAATATGAGGACCCTATGTGTGGCCTGCCATTATGATGTCACTACAGCACAGTGTGCTGAACGACGCAAAGAAAGAGCCAAGGCCAAGAAACAACTGAAATTAGTGATGAGTGAGTTGAAAATTGGTCAAATAAAGGATGCCACAGGCTCTAATGTTAAGGAGCATGGACTTCTTGAGGTACAAGGGGATGGAATTGAGGATGAGCTTATTGTCAAGGTGCCTGGAAGTGCCTATTCTGTAGCTAATGGCTAA 3591 0.4252 MEITEEQRKRAEANRLAAIARRKALFEAQEQKEPCQLLKCRKISPELNTKPRPTILLPEQPQSVSVETVSPKPRPPKFLVRLEICSPDFFSATPRFLQGFPYPGEERCLQRLSESLSDVMPSHYTQNHSGGKACVYKLGDYSAVLKCLKIATDIKVEEIPWGTLNVVETLSHSFAANRWIPCRPEHLSDDKVDELIGKLPRILWDALLPFQRDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFLNEGSILVVCPAVLRFTWAEELERWLPCCLPADIHLVFGHRDNPAYLRRCPRVVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTKRTSEPGEIKAVLDVASKVKRIILLSGTPSLSRPFDIFHQINMLWPGLLGKNKYEFAKTYCDFKYIKGIQGKLFADFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIWLLLKRSDVIAAKTAVGKLNGNTSKSATEEMTSDSLDPPDGVLWKRSDVVAAQTAVVNTNTSNSGTEDMTLESLYESDGKLSYQELGIAKLSGFCEWLSLHPVVAESENASKMIIFAHHHKALDGVQEFVCEKGIGFIRIDGNTLARDRRSAVVSFQSRPEVKIAIIGILAAGFGLDFSSAQNVVFLELPRCPSLMLQAEDRAHRRGQTNAVNVHIFCAKDTLDESHWKNLNKSLHRVSSTTDGKYDAVKEIQVEGVSYLDTHVKTDSSIEEQSASNETSEQADKVSWPESGEASILDGNLDVDVFDTKERCSDMDLDRGGGIKYQNTDFIQKNHGEDDQVDENEKSSPTIEVDDYQPIQQIEADENSSSQVESLRFEVSPYTGRIHLYTCILGEDTRPRPLFENFRPEELEWLSSLADDDEKKKDISIKDNPAYTRALLEFLNEWKKLRPIERKKLLGKPLQLPLAAELCYLSESNSHNNKGLLNGGSKRRMTPLVEISHPLPSDAVWKKIYLRSGNGKKEKEYTQGWTLTDEPLCKLCQKTCMGNNAKTPDYFEDLFCNLVCYEEYRMRTSNKFLRQLEMIQELFEIENGVCSICHLDCHKLVEHIRPLSLASRQEYIEKVAPKVAKRKNMLEKLVNDPTEGNAWHADHIVPVYQGGGECRLENMRTLCVACHYDVTTAQCAERRKERAKAKKQLKLVMSELKIGQIKDATGSNVKEHGLLEVQGDGIEDELIVKVPGSAYSVANG 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0413 1196 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 216 380 IPR014001 -
Dere14g0413 1196 Pfam SNF2-related domain 225 473 IPR000330 GO:0005524|GO:0140658
Dere14g0413 1196 Gene3D - 470 738 IPR027417 -
Dere14g0413 1196 MobiDBLite consensus disorder prediction 714 742 - -
Dere14g0413 1196 CDD HNHc 1087 1127 IPR003615 -
Dere14g0413 1196 Gene3D - 185 412 IPR038718 -
Dere14g0413 1196 SMART helicmild6 572 655 IPR001650 -
Dere14g0413 1196 CDD SF2_C_SNF 556 666 - -
Dere14g0413 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 431 IPR027417 -
Dere14g0413 1196 MobiDBLite consensus disorder prediction 717 734 - -
Dere14g0413 1196 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1144 - -
Dere14g0413 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 706 IPR027417 -
Dere14g0413 1196 Coils Coil 1 23 - -
Dere14g0413 1196 SMART ultradead3 203 399 IPR014001 -
Dere14g0413 1196 Gene3D - 1011 1152 - -
Dere14g0413 1196 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 547 701 IPR001650 -
Dere14g0413 1196 Pfam HNH endonuclease 1093 1124 IPR002711 GO:0003676|GO:0004519|GO:0008270
Dere14g0413 1196 Pfam Helicase conserved C-terminal domain 553 655 IPR001650 -
Dere14g0413 1196 CDD DEXHc_HARP_SMARCAL1 207 431 - -
Dere14g0413 1196 FunFam SNF2 DNA repair protein, putative 181 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0413 Dere-ChrDere14 4360906 4392458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0413 560 708 RAD5 or RAD16-like Gene Family AT1G11100 33.775 1.73e-14 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere14g0413 SNF2_N 2.8e-24 CL0023