Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0407 ATGCGTAAAGAACCAACCGAACTATGTGAGCCCAAAAAATTGAGCAGGAAAGCCACGGGCCAATGGTGTTTGTGTGCTCAAGATTCTGCTTCATCACTGCGACTCTGCGAGGCACGCACGCAGTTCACAGAAAGGACGCAATTCGCAGAACTCCTCCTCTGGCTGAGTCTCTTGCCTGTTTCATATACATTCGTCCAAATGTACCCTCAGCCCCATACTCACCTCTTTTCTCAGCAACCTTATTCTTCAAACTCATTCTTCCTACCTTTTCCTCAAACTGCGCTTCCCACTGCGCCATCGGATTCCACTCTTCATCCTCCCGGCTCCGACCCACTTGTAACTTCGGCCTTATATGCCTTGTTTCATTCCGCTTATGGAGGTCAATCAATGAATTCTCTGGATTCGAACGCAGATCCTCCGAATTGGATCGTCAAACAAGTTCGCCCCTTAAGATATGAAGCCGCTGCCGAAACTTCTCTTGGTATTTCAGCTGCGCCCACAAGTTATCCTTCTGCGTGGAATGACAGCTGGGCACATCAACTTTTGCCTAATGTTACCCCAGTGGTGTTGCCTAAGCCAAACCAAACCAAAGTCAATGAAACAATGCGATGTGAGATTTGCAAAATTAATTGCAGTACCAAAGATGTTTTTGAAAAGCACATATCAGGAAAGAAGCACAAGAGGAATATGCAGTTGCTGAAGAATCCCACTAATACAACATTAGCAGGAAACTCTTATGCGAATTTACAAAATCAAATGAGTAGTGTCCAAGGGCAAGATCTATTTGGTGCTGTAGGCAAGGAGTTAGAGTCTAAGAAACAGAAGCTTTTGAGTGGTGGTGCAGCAGTTGACTCAGTAAGGGTTTGCACGATATGCAACATTGCTTGTAATAGTCAAGAAGTATTTAACAAACATCTAACTGGGAAAAAGCATGCTGCTCAGGTTGGCTTGATGTCTGACTGTGGGATTGGTCCTTATCTTGCTTCATTTAAACGTCATGGCATTGGTCCTTGGAAAAAAGCCCCAAAGAAAATCAAGTTTGCTCAACCTGCATGGTGTGAGGTTTGCAAGATCAATTGTAATAGCAGGGATGTGTATATTGCACACTTATCAGGAAAAAAACACCTGAGGAACCTGGAGAAATTATCAAAATCAGAAAATGCTGCTGCTGGTCCAATTGCGTCATGTGTAACATCAAATGCTTTGCAACTTGCATCCGGTCCAGTAATTGGGCCCCAGGGGAAGCCAAACACTTGTAAAGATGTAGGGATAAATTCACACAAATCAGATAAGGCACACGTGTTAGAGGATATTGAGACAAAGAAATGCAAACTTGTGGCAGGTGGAGCTGCAGTAACTGCTATTAAATTCTGCACTCTGTGCAATGTGGTGTGCAACAGCCAAACGGTCTTCAATTATCACCTTTCTGGGCAGAAACACGCTGCAATGGTGAAGACGCAGGCAGGGTCAACTGCTAATTAA 1482 0.4426 MRKEPTELCEPKKLSRKATGQWCLCAQDSASSLRLCEARTQFTERTQFAELLLWLSLLPVSYTFVQMYPQPHTHLFSQQPYSSNSFFLPFPQTALPTAPSDSTLHPPGSDPLVTSALYALFHSAYGGQSMNSLDSNADPPNWIVKQVRPLRYEAAAETSLGISAAPTSYPSAWNDSWAHQLLPNVTPVVLPKPNQTKVNETMRCEICKINCSTKDVFEKHISGKKHKRNMQLLKNPTNTTLAGNSYANLQNQMSSVQGQDLFGAVGKELESKKQKLLSGGAAVDSVRVCTICNIACNSQEVFNKHLTGKKHAAQVGLMSDCGIGPYLASFKRHGIGPWKKAPKKIKFAQPAWCEVCKINCNSRDVYIAHLSGKKHLRNLEKLSKSENAAAGPIASCVTSNALQLASGPVIGPQGKPNTCKDVGINSHKSDKAHVLEDIETKKCKLVAGGAAVTAIKFCTLCNVVCNSQTVFNYHLSGQKHAAMVKTQAGSTAN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0407 493 SUPERFAMILY beta-beta-alpha zinc fingers 283 315 IPR036236 -
Dere14g0407 493 Gene3D Classic Zinc Finger 440 487 - -
Dere14g0407 493 Gene3D Classic Zinc Finger 189 233 - -
Dere14g0407 493 Gene3D Classic Zinc Finger 266 317 - -
Dere14g0407 493 Pfam Zinc-finger of C2H2 type 457 480 - -
Dere14g0407 493 Pfam Zinc-finger of C2H2 type 204 226 - -
Dere14g0407 493 Pfam Zinc-finger of C2H2 type 352 375 - -
Dere14g0407 493 Pfam Zinc-finger of C2H2 type 289 311 - -
Dere14g0407 493 Gene3D Classic Zinc Finger 340 388 - -
Dere14g0407 493 SMART c2h2final6 456 480 IPR013087 -
Dere14g0407 493 SMART c2h2final6 351 375 IPR013087 -
Dere14g0407 493 SMART c2h2final6 287 311 IPR013087 -
Dere14g0407 493 SMART c2h2final6 202 226 IPR013087 -
Dere14g0407 493 SUPERFAMILY beta-beta-alpha zinc fingers 192 234 IPR036236 -
Dere14g0407 493 PANTHER ZINC FINGER PROTEIN 385B-LIKE 348 491 - -
Dere14g0407 493 SMART ZnF_U1_5 453 487 IPR003604 GO:0003676|GO:0008270
Dere14g0407 493 SMART ZnF_U1_5 199 233 IPR003604 GO:0003676|GO:0008270
Dere14g0407 493 SMART ZnF_U1_5 348 382 IPR003604 GO:0003676|GO:0008270
Dere14g0407 493 SMART ZnF_U1_5 284 318 IPR003604 GO:0003676|GO:0008270
Dere14g0407 493 SUPERFAMILY beta-beta-alpha zinc fingers 349 382 IPR036236 -
Dere14g0407 493 SUPERFAMILY beta-beta-alpha zinc fingers 454 487 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0407 Dere-ChrDere14 4322333 4325364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0407 269 484 C2H2 Transcription Factor Family AT5G61190 30.137 1.67e-19 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere14g0407 zf-met 2.2e-06 CL0361