Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0406 ATGGAAGAAGAAGATCAAGTAGTGTTGAAACATGTGTGTAAATTCTGTAGCAAGAGCTTCCCATGTGGTAGATCTTTAGGAGGGCACATGAGGTCACACATCACCAATATTTCAGCTGAAACAGAGGAGAAAGTCATAACAACGAGGAAGCTTCAATCTGTCAACAATGGCGGAGCTGGAAGCAGTAAGGTTGGAGAGTACGATCTCAGAGAGAACCCCAAAAAGACTTGGAGATTTGCAGATTCAAGAAGCGAGGAAACTCCACTAGTCACGGAGGGCAAGTTCTGCAAGGAGTGTGGTAAAGCGTTTCACTCTTGGAAAGCTCTTTTTGGCCACATGAAATGCCATTCCGAGAAAGACAGAGCTTGCATTAACAACAACAACAGCAACAACTTGGAGGATCAAGATTCTTCAAGCCAGAAAATCGTCACAGATAGCCAATCCGACAACGAAGCCACTGCTAATCCGAACCGAAGAAGAAGATCCAAGAGGAGAACAAGGTATGTGACCGTCGCTTCAACTTCTTCTCTGACTTTTGCGAATCCTTCGTCCTCTGTTTCTGAGGTTGAACAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTAAGTAGGGACGTGGGTCATTGGGGTGGTTTGAATTCTCTTGTTGAGTCCTCTGACAATAACTCTACCTATTTCGAAGCTCGATCTTCATTGGTTCGAACTAATCTGAGCAGTAAAGTTGAAAGCGAAAAAGCAAAACTGACCATTGGCAGCAATTACGATTCTTCAAATTTGCCAGTGAATTTCGCAACTGGGTCTCCGAGAAATGGGTCGGAAGCGATCAAAGCAAAAGTTTCCATCAATGGGTTGGTCAAGAATTGTAAAGAAAAGAAGCACGAGCTTGACTACCAGTCGGCATTGGAGGATTCTGAAGACGAACAGGGGAAGAACGAAGTCAATGGAAAAGAACCAGATTCATCAAAGAAGAGAAAACTTTCGGATTCTGAGCCGAAGTCAAGTTCTAAGAAAGGGAAGTTCAAGTGTACTACTTGCAACAAGATCTTCCATTCATACCAAGCTCTGGGAGGCCACAGAGCCAGTCATAAGAAGATGAAAGGCTGCTCTGCTTCGAGAAACGAGAGCAGCGAAAACAGCATAGAAACAGACCTCAAAAATGGGGATGTGGCTGAAGAACAAGAGCTTCTTGCTTCTGGTAATTTTGAGAATGAGGAAGAGAAAGTCATAGAACCCAAGAAGAACAACGGACACGAGTGTCCAATTTGCCTGAAGGTTTTCCAATCTGGGCAAGCTTTGGGTGGTCACAAGAGATCTCATTTGGCTGCTGGAGGGTCAATAGTACTAGAGAAACCAGTTCAGGAAATCAGAGACTTTCTTGATCTTAATCTTCCTGCTGCCACAGAAGAAGAAAGCCATAGTCATGCGGAGAATTACACTCCATGGTGGGTAGTAGAAGGCCATCACCCCAAGCAGGAGGCACTGGTTGGCCTCATGTCTAACTAA 1506 0.4456 MEEEDQVVLKHVCKFCSKSFPCGRSLGGHMRSHITNISAETEEKVITTRKLQSVNNGGAGSSKVGEYDLRENPKKTWRFADSRSEETPLVTEGKFCKECGKAFHSWKALFGHMKCHSEKDRACINNNNSNNLEDQDSSSQKIVTDSQSDNEATANPNRRRRSKRRTRYVTVASTSSLTFANPSSSVSEVEQEQEEVAMSLMMLSRDVGHWGGLNSLVESSDNNSTYFEARSSLVRTNLSSKVESEKAKLTIGSNYDSSNLPVNFATGSPRNGSEAIKAKVSINGLVKNCKEKKHELDYQSALEDSEDEQGKNEVNGKEPDSSKKRKLSDSEPKSSSKKGKFKCTTCNKIFHSYQALGGHRASHKKMKGCSASRNESSENSIETDLKNGDVAEEQELLASGNFENEEEKVIEPKKNNGHECPICLKVFQSGQALGGHKRSHLAAGGSIVLEKPVQEIRDFLDLNLPAATEEESHSHAENYTPWWVVEGHHPKQEALVGLMSN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0406 501 MobiDBLite consensus disorder prediction 126 167 - -
Dere14g0406 501 SUPERFAMILY beta-beta-alpha zinc fingers 95 363 IPR036236 -
Dere14g0406 501 MobiDBLite consensus disorder prediction 126 153 - -
Dere14g0406 501 ProSitePatterns Zinc finger C2H2 type domain signature. 343 363 IPR013087 -
Dere14g0406 501 Gene3D Classic Zinc Finger 8 116 - -
Dere14g0406 501 MobiDBLite consensus disorder prediction 297 338 - -
Dere14g0406 501 Pfam C2H2-type zinc finger 96 118 - -
Dere14g0406 501 Pfam C2H2-type zinc finger 418 442 - -
Dere14g0406 501 Pfam C2H2-type zinc finger 341 365 - -
Dere14g0406 501 Pfam C2H2-type zinc finger 11 33 - -
Dere14g0406 501 MobiDBLite consensus disorder prediction 361 382 - -
Dere14g0406 501 SUPERFAMILY beta-beta-alpha zinc fingers 11 35 IPR036236 -
Dere14g0406 501 ProSitePatterns Zinc finger C2H2 type domain signature. 420 440 IPR013087 -
Dere14g0406 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Dere14g0406 501 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 483 - -
Dere14g0406 501 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Dere14g0406 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 341 368 IPR013087 -
Dere14g0406 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 33 IPR013087 -
Dere14g0406 501 MobiDBLite consensus disorder prediction 297 340 - -
Dere14g0406 501 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Dere14g0406 501 Gene3D Classic Zinc Finger 338 440 - -
Dere14g0406 501 SMART c2h2final6 94 116 IPR013087 -
Dere14g0406 501 SMART c2h2final6 418 440 IPR013087 -
Dere14g0406 501 SMART c2h2final6 341 363 IPR013087 -
Dere14g0406 501 SMART c2h2final6 11 33 IPR013087 -
Dere14g0406 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 418 440 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0406 Dere-ChrDere14 4311080 4312585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0406 10 470 C2H2 Transcription Factor Family AT1G26610 36.527 6.27e-66 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere14g0406 zf-C2H2_6 3.8e-12 CL0361