Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0393 ATGGCATCGGGAAAGCGATGCCACTATGAGGTCCTCGGCCTCCAACGAGACTGCACCCCCGACCAGATCCGATCGGCTTACAGGCGGCTTGCCCTTCAGCGCCACCCTGACAAGCTCGTCAAGTCCGGTTTGTCCCAAGCCGAAGCCACGGCACAATTCCAGGAGCTCCAACATGCCTACGAGGTCCTTTCCGACCCAAAAGAGCGAGCTTGGTACGATTCCCACCGGTCTCAGATCCTGTTTTCCGATCCCAACTCAGTCGGAAACTCGGTCCCTAACTCTTTCATCCCTAACCTGTTTTCGTTCTTCTCCAGTACCGTTTATTCTGGGTATTCGGATACCGGCAAGGGGTTCTATAAGGTTTATTCCGATGTTTTTGATAAAATTCATGCTAATGAAATTAACTTTGCGAAGAAATTAGGGCTAGGTATTGGTGTGGTCCGGCAAGCTCCTCTAATGGGCAATTTGGATAGCCCGTACGCCCAAGCGACAGCGTTTTACAATTACTGGTTGGGATTTTCTACGGTTATGGATTTTTGTTGGGTGGACGAGTATGACGTTATGGCTGGTCCCAACCGGAAGTCGAGGCGGCTTATGGAAGATGAGAACAGTAAGATCAGGAGGAAGGCAAGGAAGGAGTACAATGACACGGTGCGGAAGTTGGCGGATTTTGTAAAGAAGAGGGATAAAAGGGTGATTGATATGAAAGTGAAAAAGAATAAGGAGATGGAGAAGAAGAAAGAGGAGGAGAGGGAAAGGAAGAAGCAGTTGGAGAAGGAGAAAAAGGAGAGAGCGATGGCATATGAAGAGCCTGAGTGGGCCGAAGTGGAGGAAGATGAAGAAGATGAGGTAAACTGGTTTGAGGAGGAGAGTAGGAGGAAAAATGCTGAGAATGAGTTTTATTGTGTATTATGTGGGAAGAAGTTCAAAAGCGAGATGCAATGGAAGAACCATGAGCAATCAAAGAAGCATAAGGAGAAAGTTGCAGAATTTAGAGATTCACTTAATGACGAAGAGGAATTTCAAGAGGATGTGGAAGTAGAGGTGGAAGAAAGAGGGAAGTTGAGTTTGGAAAGTGATGGGGATGAAATTGGGTTGAATGATGATCAGTCAGGGAGCACTGACCATGAAATTCATGATTTAGAGGGGAGAATTAGAGATGGCCTTAATGTTACAGAGGAGGTGACTAGAAATGGGGTTGAGTTGAATGAAGAAGATGAATTTCTAGATGCCCAGGATCCAAAAGCGGAGGAAATGGCTGGCGTCTCAGTAGGTTTTGATGGAGAAGATGATGATGATGAATTGGATGTTCTTGAAGCAATGCTGGCTGGGGACAGGAGCAGAAAAATTGGTGCTTCAAGGCAGGAGCCCAAGGCTCCAGTGATTACATCCCAAATTGACGATGAGAATGATAAGGTTGGCTTTAAGGAATATGACAGCCGAAAGAATTCTAGGAAAAAACGGAGAGCCAAGAAAGAGAAGGGTAGAAAAATTAGTGAAGAATCGAATGTGACTACTGCTAATAGTGATTTTCAGAATAAGAGCAATATTGACGATGATACATCTCATACAGAGGAGTCTTCTTCCCAATATAATGTGGAGAATGAGAGTAATGGTGAAGAGAATGAAGATGTAGGTAGAGATGACAAGACTTCAAATCAACCTGTTCATAAAAAAGGAGCAGCAAAAGATAAGATAACCAATTCAAAACTTTCATCCAAAGGAAGAAAAGCTAAGGTGACATCGAAGAATCTCGGCAATATCTGTGAGGCCTGCGGAGAGGAGTTTGATTCAAGGAATAAATTACACAAGCATCTGGGTGATACAGGGCATGCGACGATTAAATCCACGAGAAAGCATCACTAG 1866 0.4464 MASGKRCHYEVLGLQRDCTPDQIRSAYRRLALQRHPDKLVKSGLSQAEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSVGNSVPNSFIPNLFSFFSSTVYSGYSDTGKGFYKVYSDVFDKIHANEINFAKKLGLGIGVVRQAPLMGNLDSPYAQATAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRLMEDENSKIRRKARKEYNDTVRKLADFVKKRDKRVIDMKVKKNKEMEKKKEEERERKKQLEKEKKERAMAYEEPEWAEVEEDEEDEVNWFEEESRRKNAENEFYCVLCGKKFKSEMQWKNHEQSKKHKEKVAEFRDSLNDEEEFQEDVEVEVEERGKLSLESDGDEIGLNDDQSGSTDHEIHDLEGRIRDGLNVTEEVTRNGVELNEEDEFLDAQDPKAEEMAGVSVGFDGEDDDDELDVLEAMLAGDRSRKIGASRQEPKAPVITSQIDDENDKVGFKEYDSRKNSRKKRRAKKEKGRKISEESNVTTANSDFQNKSNIDDDTSHTEESSSQYNVENESNGEENEDVGRDDKTSNQPVHKKGAAKDKITNSKLSSKGRKAKVTSKNLGNICEACGEEFDSRNKLHKHLGDTGHATIKSTRKHH 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0393 621 SMART ZnF_U1_5 297 331 IPR003604 GO:0003676|GO:0008270
Dere14g0393 621 MobiDBLite consensus disorder prediction 347 361 - -
Dere14g0393 621 MobiDBLite consensus disorder prediction 241 274 - -
Dere14g0393 621 MobiDBLite consensus disorder prediction 318 385 - -
Dere14g0393 621 SMART dnaj_3 6 68 IPR001623 -
Dere14g0393 621 MobiDBLite consensus disorder prediction 444 580 - -
Dere14g0393 621 Coils Coil 232 267 - -
Dere14g0393 621 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 329 IPR013087 -
Dere14g0393 621 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 2 616 IPR044648 -
Dere14g0393 621 SUPERFAMILY Chaperone J-domain 4 97 IPR036869 -
Dere14g0393 621 Pfam Zinc-finger double-stranded RNA-binding 300 325 IPR022755 -
Dere14g0393 621 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Dere14g0393 621 PRINTS DnaJ domain signature 27 42 IPR001623 -
Dere14g0393 621 PRINTS DnaJ domain signature 9 27 IPR001623 -
Dere14g0393 621 PRINTS DnaJ domain signature 48 68 IPR001623 -
Dere14g0393 621 MobiDBLite consensus disorder prediction 543 571 - -
Dere14g0393 621 SMART c2h2final6 300 324 IPR013087 -
Dere14g0393 621 SMART c2h2final6 587 611 IPR013087 -
Dere14g0393 621 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Dere14g0393 621 Gene3D DnaJ domain 1 87 IPR036869 -
Dere14g0393 621 SUPERFAMILY beta-beta-alpha zinc fingers 293 341 IPR036236 -
Dere14g0393 621 Pfam DnaJ domain 8 73 IPR001623 -
Dere14g0393 621 ProSitePatterns Zinc finger C2H2 type domain signature. 589 611 IPR013087 -
Dere14g0393 621 MobiDBLite consensus disorder prediction 318 335 - -
Dere14g0393 621 MobiDBLite consensus disorder prediction 369 385 - -
Dere14g0393 621 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Dere14g0393 621 CDD DnaJ 7 65 IPR001623 -
Dere14g0393 621 Gene3D Classic Zinc Finger 289 347 - -
Dere14g0393 621 MobiDBLite consensus disorder prediction 501 515 - -
Dere14g0393 621 MobiDBLite consensus disorder prediction 241 271 - -
Dere14g0393 621 ProSiteProfiles Zinc finger C2H2 type domain profile. 587 616 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0393 Dere-ChrDere14 4059002 4061327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0393 3 616 C2H2 Transcription Factor Family AT1G74250 51.455 6.31e-179 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere14g0393 DnaJ 1.4e-21 CL0392