Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0385 ATGGTTGATGAGTGGATGTCACCAATGGAAATTGAATATATCTTGAAGATCCCAACCCCTAGAGGCTGGATTGGTAAAAAGGATGGTGATGCTTTCAATGAAGATTCCGGGAAGGCAAGTAATGGAGTAATTATCAGAAACAATAAGGAAATGGTGTTGGTTTCTTACAACTCTTATGTTTCATTTATGGCTGAGGTCCTAGCACTGAAGAAATATCCTTCCTTGTACTCTCAATCCTTGCCTTCCTCGCTCTGTTCCCCTTCCCCGACAGCCATGGCCGCGGCGGCTAGACCTCTCGTCACCGTGCAAGCCCTTGAAGGCGATATGGCCACCGATGCAACCCCAACGGTCCCACTCCCCGATGTCATGAAGGCGTCGATTAGACCCGACATTGTCACATTCGTTCACTCCAACATATCCAAGAACAGCCGCCAACCCTACGCCGTCAGCAAGCGCGCCGGCCACCAGACCTCCGCCGAGTCATGGGGTACCGGCCGAGCCGTCTCTCGTATACCCCGTGTCCCTGGTGGTGGGACCCACCGTGCCGGGCAGGGTGCCTTCGGCAACATGTGTCGTGGTGGACGCATGTTCGCTCCTACCAAGACTTGGCGCCGCTGGCACCGTAGGGTTAATGTGACCCAGAAGCGTCACGCCGTCGTTTCAGCCATTGCTGCTTCCACGGTTACTTCTCTTGTTCTGGCTCGCGGTCACCGGATTGAGTCTGTCCCGGAGATGCCTCTTGTCGTCAGTGACTCAGCTGAGAGTGTTGAGAAAACAAAGGACGCGATCAAAGTTCTGAAGCAGATTGGTGGGTTACCTGATGCTGAGAAGGCAAAGAATAGCCACTCGATTCGACCTGGTAAGGGTAAGATGAGGAATCGCCGATATATTTCTCGCAAAGGTCCTCTAATTGTGTACGGAACTGAAGGAGCTAAAGCGGTGAAGGCATTTAGGAACATACCTGGTGTTGAGGTTGCTAATGTGGAGAGATTGAATCTGCTGAAGCTAGCACCTGGTGGTCATCTTGGGAGGTTCGTCATTTGGACCAAGTCGGCTTTTGAGAAGCTGGATTCTATCTATGGGTCGTTCGATAAGCCATCAGAGAAGAAGAACGGTTACCTGCTTCCTAGGTCCAAGATGGTCAATTCTGATTTGGCAAGGATTATCAACTCTGATGAGATTCAATCCGTTGTGAGGCCGATTGAGAAGGAAGTCAAGAGGGCACCACTGAAGAAGAACCCACTTAAGAACTTGAATGCTATGTTGAAGCTGAATCCATATGCCAAGACGGCTAAGAGGATGGCTCTTCTTGCTGAAGCTGAGCGAGTGAAAGCAAAGAAGGAGAAACTTGATAAGAAGAGGAAGTCTGTCCCTAAGGAGGAGGCTTCTGCTATCAAGGTTGCAGGAAAGGCATGGTACCACACGATGATCTCTGACAGTGATTACACCGAGTTTGAGAACTTTTCAAAATGGTTGGGTGTTTCCCAGTGA 1491 0.5023 MVDEWMSPMEIEYILKIPTPRGWIGKKDGDAFNEDSGKASNGVIIRNNKEMVLVSYNSYVSFMAEVLALKKYPSLYSQSLPSSLCSPSPTAMAAAARPLVTVQALEGDMATDATPTVPLPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRRWHRRVNVTQKRHAVVSAIAASTVTSLVLARGHRIESVPEMPLVVSDSAESVEKTKDAIKVLKQIGGLPDAEKAKNSHSIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKNGYLLPRSKMVNSDLARIINSDEIQSVVRPIEKEVKRAPLKKNPLKNLNAMLKLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKSVPKEEASAIKVAGKAWYHTMISDSDYTEFENFSKWLGVSQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0385 496 Coils Coil 433 453 - -
Dere14g0385 496 ProSitePatterns Ribosomal protein L1e signature. 211 237 IPR013000 -
Dere14g0385 496 FunFam 60S ribosomal protein L4 94 399 - -
Dere14g0385 496 Pfam Ribosomal protein L4/L1 family 117 357 IPR002136 GO:0003735|GO:0005840|GO:0006412
Dere14g0385 496 SUPERFAMILY Ribosomal protein L4 111 358 IPR023574 GO:0003735|GO:0005840|GO:0006412
Dere14g0385 496 PANTHER 60S RIBOSOMAL PROTEIN L4 95 489 IPR045240 -
Dere14g0385 496 Gene3D - 94 399 IPR023574 GO:0003735|GO:0005840|GO:0006412
Dere14g0385 496 MobiDBLite consensus disorder prediction 145 164 - -
Dere14g0385 496 MobiDBLite consensus disorder prediction 145 186 - -
Dere14g0385 496 Pfam 60S ribosomal protein L4 C-terminal domain 372 443 IPR025755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0385 Dere-ChrDere14 3984486 3987835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0385 93 496 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.168 0.0 675