Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0383 ATGTATTCGCCGGTTCGCATTTCAAGGATCGGAATGCACGCTAGACAATCTCCATACGCTTGCAGGGACACAGCGAAGCGAGGTAAGATTACAGCAATGGCTTTTCTTGGTAGAGTTGGGAATATACTAAGACAGGCTGCAAATAGGCAGCTCAGTTCAGAATTACGTTCAACTCCATCTATTTTTAAGGCTATACGGTGCATGTCATCTAGTGCAAGTTCGAAAGTGTTTGTGGGAGGATTGTCATATTCTACTGATGAGCAAAGCTTGAGGGAAGCTTTTGCAAAATATGGTGAAGTAGTTGATGCGAGGGTTATTATGGATCGTGACACTGGTAGATCTAGAGGCTTTGCCTTTGTTACATTCACTTCTGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTGGATGGACAGGATCTTCATGGTCGCCGGGTTAGGGTGAATTATGCTAATGATAGGACTCGTGGATTTGGTGGTGGTGGTGCTGGTTTTGGTGGTTCTTATGGTAATGCTCCATATGGTGCTGGTTATGGAGGTGGTTATGGTAACCCTCCCTATGGTGGTTCTGGTGCATATGGTGGCAGTGCTAATGAAGGTTATGGTGGTGGTGGATATAGCGGAGGAAGCTATGGATCAGGTGGCAATTTTGGGGGCAGCACTGGCAATAACTATGCTTCTAACAGTTTTGGATCAGGAACTGCTGGTGGCAATTATGGTGGAAGTGGAATGAATTATGGGAATGATGGTAGTTTTGCAAGTGGAAGCACTTATGCTGGTGGAAGTAGTGGAGGATATGGTGGTAACAGTGGAAGTGAAGCTGCTGCTGACAGTTTTGGAACTGGAAGTGCCGGTGGCAGCTTTGGTGGAAGTGGAATGAGTGGAAGCACTTATGCTGGTGGAAGTAGTGGAGGATATGGTGGTAACAGTGGAAATGAAGCTGCTGCTGACAGTTTTGGAACTGGAAGTGCTGGTGGCAGCTTTGGTGGAAGTGGAATGAATTATGGAAATGATGGTAACTTTGCAAGTGGAAGCAATTATACTGGTGGCAGTAGTGGAGGCTATAGTGGCAACAATGGGAACTTTGGTGTTGCTGGTGGTGGTGGAGGTAGTGATAACTACGGAAGTGCTCCTAGTTTTGGTGCTGCTGCTGGTGGAGGTATTGATGGCTTTGGCAGTGCTGCTGGATTTGGAAGCAGTGATAACTCTGGCAGTTCAGCTGGTTTCGGTGGCAATACTGGTGTCGGTTTAGGCAGCACCTTTGCTGGTAATGATGGAAGTGGAGGACTCGAGTTTGGCAGCAGTGGTCAAGTGGAGAGCAAAGAAGGCGGCAATGTAGGCAATGTAGGTGAGGATGTCGGAGATTTTGGGGACTCGACGGAGGGAAACTACCGGGATGATGATGATGATACTGGTAATTTTGCCAAAAGGGCTTGA 1434 0.4735 MYSPVRISRIGMHARQSPYACRDTAKRGKITAMAFLGRVGNILRQAANRQLSSELRSTPSIFKAIRCMSSSASSKVFVGGLSYSTDEQSLREAFAKYGEVVDARVIMDRDTGRSRGFAFVTFTSVEEASSAIQALDGQDLHGRRVRVNYANDRTRGFGGGGAGFGGSYGNAPYGAGYGGGYGNPPYGGSGAYGGSANEGYGGGGYSGGSYGSGGNFGGSTGNNYASNSFGSGTAGGNYGGSGMNYGNDGSFASGSTYAGGSSGGYGGNSGSEAAADSFGTGSAGGSFGGSGMSGSTYAGGSSGGYGGNSGNEAAADSFGTGSAGGSFGGSGMNYGNDGNFASGSNYTGGSSGGYSGNNGNFGVAGGGGGSDNYGSAPSFGAAAGGGIDGFGSAAGFGSSDNSGSSAGFGGNTGVGLGSTFAGNDGSGGLEFGSSGQVESKEGGNVGNVGEDVGDFGDSTEGNYRDDDDDTGNFAKRA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0383 477 SMART rrm1_1 75 148 IPR000504 GO:0003723
Dere14g0383 477 Gene3D - 44 169 IPR012677 -
Dere14g0383 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 152 IPR000504 GO:0003723
Dere14g0383 477 SUPERFAMILY RNA-binding domain, RBD 72 182 IPR035979 GO:0003676
Dere14g0383 477 PRINTS Eggshell protein signature 70 86 - -
Dere14g0383 477 PRINTS Eggshell protein signature 229 239 - -
Dere14g0383 477 PRINTS Eggshell protein signature 259 277 - -
Dere14g0383 477 PRINTS Eggshell protein signature 200 215 - -
Dere14g0383 477 MobiDBLite consensus disorder prediction 457 477 - -
Dere14g0383 477 MobiDBLite consensus disorder prediction 425 477 - -
Dere14g0383 477 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 60 231 - -
Dere14g0383 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 146 IPR000504 GO:0003723
Dere14g0383 477 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 44 181 - -
Dere14g0383 477 CDD RRM2_NsCP33_like 75 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0383 Dere-ChrDere14 3958336 3961588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0383 74 172 Eukaryotic Initiation Factors Gene Family AT3G16380 36.275 2.11e-10 60.8