Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0378 ATGGCGAAATCTGCTACCCCAGATGCGATTTCGATATTGCTTGTAAACCCGTCGCCGGATTCTTCCTCGGAGCTTCCTGAGATCGTCGTCCAAGTTCTGGATCTCAAGCAAAGCGGTAACAGATATATGTTCACTGCTAGTGATGGGAAGATGAAGTTAAGGGCAATTCTTCCCTCAAATCAGAATTCTCAGGTCATTTCAGGAAATATTCAGAACCTGGGTCTTATCCGCATCGTTGACTATACTCTCAACGACATCCCAAATAAGTCAGAGAAATATCTCATTGTCACAAAATGTGAACCGGTCTCTCCTGCACTTGAAATGGAGATTAAAACAGAAGTCAAGAGCGAGGATCCCGCTATTGTTTTGAATCCAAAAAGAGATGGTGAAGTCAAAACCGAAGTGAAAAGTGAAGGATCTGGCATTATTTTGAGACCGAAGCAAGAAATGATGGCCAAATCTGCAGCTCAGATTGTACACGAACATCATGGAAACATGGCCCCTACTGCACGAATGGCCATGACACGCAGGGTGCGCCCTCTCGTTTCCTTAAATCCTTACCAGGGCAATTGGACGATCAAGGTTCGTGTCACAAGCAAAGGGAACATGCGTACCTATAAGAATGCAAGAGGGGAAGGTTGTGTCTTCAACGTGGAATTGACAGATGAAGATGGCACTCAAATTCAAGCAACGATGTTTAATGAGGCTGCAAGGAAATTTTATGAGAGATTTGTGCTAGGGAAGGTTTACTACATTTCCAAGGGAACTTTAAGAGTAGCTAACAAACAATTCAAAACTGTCCAAAACGATTATGAAATGACATTGAATGAAAATTCCGAGGTGGAAGAGGCGACTAATGAAGAAAGTTTTGTTCCAGAAACAAAATTTAACTTTGTCCAGATTGATCAGCTGGGTCCTTTTGTCAACAGGAGTGACCTTGTCGATGTTGTGGGAGTTGTTCAGAATGTGTCTGCAACCATGAGCATTCGCCGGAAGAGTAACAATGAGAGTGTTTCAAAGCGTGATATTACTCTTGCTGATGAAACAAAGAAGACCGTGGTTGTGTCTTTGTGGGGTGAACTTGCAACTAATGTAGGGCAAGAGTTGCTGGACATGGCCGATAAAGCTCCAATAGTTGCAATCAAATCCCTCAAGGTTGGAGACTTTCAAGGTGTTTCCTTGTCATCTATAAGCAAAAGCATAGTTCTAATAAATCCCGATACACCTGAAGTGAAAAAGCTTAGAAGCTGGTATGAGTCTGAAGGTAAAGATGCTCCAATGGCTTCTGTAGGCTCTGGCTCAAGTCCCGTAACAAAAAATGGAATGAGATCAGTGTACTCTGACCGTGTTTCACTAGCTCACATAACCTCGAACAAATCCATGGGGGAGGACAAGCCTGCATTTTTCAGTATTAGAGGACATATAAGCTTTATCAAGCCTGACCAAACAATGTGGTACCGAGCTTGTACAACTTGCAACAAGAAAGTCACTGAAGGCATTGGCAATGGCTATTGGTGTGAAGGCTGCCAGAAAAATGTGGAAACCAGTTTAAGGTATATTATGGTTGTAAAGGTTTCTGATGCAAGTGGAGAAGCTTATATCTCAGTCTTCAATGATGAGGCTGAGGCGATTGTTGGGTGTTCTGCTAATGAGCTAGATAGCCTAAAATCACAGGAGGGAGAAGATAATCCATATCAATTGAAATTGAAGCAAGCTACTTGGACCCCTCATCTTTTCCGGGTTAGTGTTTCTCAGAACGAGTATATGAACGAGAAGAGGCAGAGGATAACAGCCCGAGCAGTTGCTCCTGTTGACTTTGCTGCTGAATCAAAAATTCTCCTGGACGAGATATCAAAAATGAGAGTTTCTCACTAA 1875 0.4272 MAKSATPDAISILLVNPSPDSSSELPEIVVQVLDLKQSGNRYMFTASDGKMKLRAILPSNQNSQVISGNIQNLGLIRIVDYTLNDIPNKSEKYLIVTKCEPVSPALEMEIKTEVKSEDPAIVLNPKRDGEVKTEVKSEGSGIILRPKQEMMAKSAAQIVHEHHGNMAPTARMAMTRRVRPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYERFVLGKVYYISKGTLRVANKQFKTVQNDYEMTLNENSEVEEATNEESFVPETKFNFVQIDQLGPFVNRSDLVDVVGVVQNVSATMSIRRKSNNESVSKRDITLADETKKTVVVSLWGELATNVGQELLDMADKAPIVAIKSLKVGDFQGVSLSSISKSIVLINPDTPEVKKLRSWYESEGKDAPMASVGSGSSPVTKNGMRSVYSDRVSLAHITSNKSMGEDKPAFFSIRGHISFIKPDQTMWYRACTTCNKKVTEGIGNGYWCEGCQKNVETSLRYIMVVKVSDASGEAYISVFNDEAEAIVGCSANELDSLKSQEGEDNPYQLKLKQATWTPHLFRVSVSQNEYMNEKRQRITARAVAPVDFAAESKILLDEISKMRVSH 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0378 624 CDD RPA1_DBD_A 180 283 - -
Dere14g0378 624 Pfam Replication factor-A protein 1, N-terminal domain 6 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Dere14g0378 624 SUPERFAMILY Nucleic acid-binding proteins 296 424 IPR012340 -
Dere14g0378 624 Gene3D - 6 112 IPR012340 -
Dere14g0378 624 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Dere14g0378 624 FunFam Replication protein A subunit 177 286 - -
Dere14g0378 624 FunFam Replication protein A subunit 4 114 - -
Dere14g0378 624 NCBIfam replication factor-a protein 1 (rpa1) 9 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dere14g0378 624 SUPERFAMILY Nucleic acid-binding proteins 4 108 IPR012340 -
Dere14g0378 624 FunFam Replication protein A subunit 290 429 - -
Dere14g0378 624 Gene3D - 177 286 IPR012340 -
Dere14g0378 624 SUPERFAMILY Nucleic acid-binding proteins 447 620 IPR012340 -
Dere14g0378 624 PANTHER REPLICATION FACTOR A 1, RFA1 191 583 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dere14g0378 624 SUPERFAMILY Nucleic acid-binding proteins 179 287 IPR012340 -
Dere14g0378 624 Gene3D - 291 430 IPR012340 -
Dere14g0378 624 CDD RPA1_DBD_C 454 619 IPR047192 -
Dere14g0378 624 CDD RPA1_DBD_B 324 419 - -
Dere14g0378 624 Gene3D - 431 620 IPR012340 -
Dere14g0378 624 Pfam Replication factor-A C terminal domain 468 613 IPR013955 -
Dere14g0378 624 FunFam Replication protein A subunit 434 620 - -
Dere14g0378 624 Pfam Replication protein A OB domain 309 404 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0378 Dere-ChrDere14 3908021 3911348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0378 1 624 Core DNA Replication Machinery Family AT5G08020 67.412 0.0 896