Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0360 ATGGGAAGAGGGAGGGTTGAGCTGAAGAGAATAGAGAACAAAATCAATAGGCAGGTGACATTTGCAAAGAGAAGAAATGGGCTGCTCAAGAAGGCTTATGAGCTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAATCGTGGCAAACTCTATGAGTTCTGTAGTGGCCCCAGCATGATGAAAACGATTGAGAAGTACCAGAAGTACAGTTATGGTGCATTGGAGTCCAGCCAGCCATTGAATGACTCTCAGAGTAGCTACCAGGAATATTTGAGACTAAAAGCGAAGGTTGAGGTCCTGCAACGATCACAGAGGAACCTTCTTGGGGAAGATCTGGCCCAAATGAATACAAGGGAGCTGGAGCAGCTTGAGAATCAAGTGGAGGCAGCACTGAAGAATATTAGGTCCACAAAGACTCAATATATGCTTGATCAGCTTGCTGATCTTCAGAACCGGGAGAGAGTTCTCGACGAAACTAATAGAGCTTTAAGCAGTAAGTTGGAAGAAAGAAGCAACTCACATGTGGCTCCAAGACTTGCTTGGGAAGTTGCAGGAGGGCCTGAATTCCATTACACTCGCTTGCCGTCTCATTCTGAAGCCTTCTTCCAGCCTCTGGGACTCAATCCCAATTTGCAAATTGGATATAATCAAGTGGGAGGCGAGGATGTAAATATTGGAGCTTCTGCCTTGAACATTCATGGATTGGTGTCTGGGTGGATGCTTTGA 738 0.4621 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGPSMMKTIEKYQKYSYGALESSQPLNDSQSSYQEYLRLKAKVEVLQRSQRNLLGEDLAQMNTRELEQLENQVEAALKNIRSTKTQYMLDQLADLQNRERVLDETNRALSSKLEERSNSHVAPRLAWEVAGGPEFHYTRLPSHSEAFFQPLGLNPNLQIGYNQVGGEDVNIGASALNIHGLVSGWML 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0360 245 FunFam MADS-box transcription factor 1 13 88 - -
Dere14g0360 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere14g0360 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere14g0360 245 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere14g0360 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Dere14g0360 245 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Dere14g0360 245 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Dere14g0360 245 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere14g0360 245 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Dere14g0360 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere14g0360 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere14g0360 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere14g0360 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere14g0360 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere14g0360 245 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0360 Dere-ChrDere14 3679724 3685084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0360 1 245 MADS-box Gene Family AT5G15800 56.107 4.42e-92 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere14g0360 K-box 2.7e-26 No_clan