Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0359 ATGGGCAGGGGAAGAGTGCAGCTGAAGAGGATCGAGAACAAGATCAATAGGCAGGTGACTTTCTCAAAGAGGAGGTCTGGTTTGCAGAAGAAAGCCCATGAGATCTCTGTGCTTTGCGATGCCGAGGTTGCTCTTATCGTCTTCTCCACCAAAGGCAGGCTTTCTCACTACTCCAGCGACCCCTGCATGGAAAGAATTCTTGAACGGTACGAGAGGTATTCATATGCGGAAAGGCAGCTAGCTGCAAGGGATCAGTCACCAAATGAAAACTGGACTCTAGAACATGCAAAGCTTAAGGCCAGGATGGAGGTCCTACAAAGAAATCTGCAGCATTTTATGGGAGAAGATTTGGAAGGCCAAAGTCTCAAAGAGCTGCAGAATTTGGAGCACCAGCTTGAGTCTGCTATCAAACATATTAGAACCCGCAAGAACCAACTCATGTATCAATCAATTTCAGAGCTTCAAAAAAGGGATAAGAAACTACAGGAACAAAACAACTTGCTGATTAAGAAGATAAAGGAGAAAGAGAAGGCCATAGCCCAGGAGGCACAAGGAGAGCAGCAAAATCATGATCAAATGGATGCAACGTCTGTCATTGTACAACCACTGATGCAGCCCTCCAATATTGGAGAAACAGGTGGTGGAGTAGATAATGAAGGAACTACAATTCGTCCGCCTCGAGTTAACCCTCTGCTTCCTCCTTGGATGCTTCCCCCTATGAATGAATAA 729 0.4568 MGRGRVQLKRIENKINRQVTFSKRRSGLQKKAHEISVLCDAEVALIVFSTKGRLSHYSSDPCMERILERYERYSYAERQLAARDQSPNENWTLEHAKLKARMEVLQRNLQHFMGEDLEGQSLKELQNLEHQLESAIKHIRTRKNQLMYQSISELQKRDKKLQEQNNLLIKKIKEKEKAIAQEAQGEQQNHDQMDATSVIVQPLMQPSNIGETGGGVDNEGTTIRPPRVNPLLPPWMLPPMNE 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0359 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere14g0359 242 Coils Coil 122 145 - -
Dere14g0359 242 Coils Coil 88 115 - -
Dere14g0359 242 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Dere14g0359 242 MobiDBLite consensus disorder prediction 227 242 - -
Dere14g0359 242 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Dere14g0359 242 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere14g0359 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 189 - -
Dere14g0359 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere14g0359 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere14g0359 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere14g0359 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere14g0359 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere14g0359 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere14g0359 242 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Dere14g0359 242 MobiDBLite consensus disorder prediction 205 242 - -
Dere14g0359 242 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere14g0359 242 Coils Coil 151 189 - -
Dere14g0359 242 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0359 Dere-ChrDere14 3666158 3671823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0359 1 206 MADS-box Gene Family AT1G26310 61.244 8.21e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere14g0359 K-box 1.6e-26 No_clan