Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0348 ATGTTGGGCGTTCCCGACTCCCCAAATAAGCGACTCAAAACCCAAATCGAAGAGGACCCCAATCACCACCTCGACTTGCGACCTTCGTCTGAGGATAACCAGCCTGATGATTCTTGCGGAATTTGCTACGCCGACCGTGGGGCTTCAATTAGAGGTGAAATTGATTGCTGCGATCACTTTTTTTGCTTCGTCTGCATCATGGAATGGTCCAAGCATGAGTCTCGATGCCCTCTCTGTCGCCAGAGATTCTCCGCCGTTCGTCGTCCTCCTAAGCCTGGTGTCTTCCCTTCCTCGCGCCTCGTTAAAGTCCCTCGTCGTGATCAGGTTTATCATGTTCATGGAAATATGACAACTTGTCCTGTTGATCCGTATGCTGAAACCCATTGTAGTGTCTGTAACGGTGGGGAAGATGAATGTTTCCTTCTCCTATGTGATCTTTGCGATACTGCTTCTCATACATATTGCGTTGGCCTCGGATATACTGTGCCTGAAGGTGATTGGTTTTGTCATGATTGTACCGTCTCCAGGGCAACCAATGACAATAATGATATAGACCATCAATTTGATATGCCAGCAGTTGAGCCAAGTGTAACAATCCATGATATCGTGAGAGAACCAAACAGCCAGGTGGTCAGGAGACCAGGACCATCTCCTTTTGTTATCCCTTTACCTGATAGGGTAAATAAAAATGATAATAGAAATCTTGACTCTGGTGCTAGGACATTGAACCGCTGTCGCAATGTGCAACATAGGATACAAGCATTGCGCGAAAATTGGAATGCTTTGAGAAGTGGTTCATTAAGCTTCTATTCCAATTCATCTGAATCAGGTGTCTGGCATGGTCAAAAACAGAAGTCCGACTCCTCAACTCATAGAAAATTAGGTCAACCACATCTTTTGGCTTCCGCAAGCTTTCAGCAATCCACAATTCAAGGTAGCCCCTATGGTAACACATCGCATGAGAGAGGCTTGAATGATGTCAACAAGGCTTGGAAAATGCTAGAGAGAGCAAAGATGATGCAAAAATCTAATCATAGAATCAGCATTCTTCCACAGGGATTGGATCATCCTTCAAGAGGTGCAGGACCTAAAAAAGCATCAAGCATTCATTGTAATGACCAAGAGTTGAAGATTCAACATTCTAGAAAGTCCACTGGTTCGGAGAAGCAGTACAAGGATTCTAGTTTCAGTAAGGATAAGGACAATTGCCGGCCTCCAGAGTTGGGAGAGCAAAAGCAAAGTAGGGTCACTTGTAAGGAGATAATGCAGCATATTGGGGACCAAGCTTCTCATTTAGAGGAATGCTGTGAACCTTCACTGCCTGAAAAAGTGCCTAGTAGCATTCAAAGTGCTCCGTGCCATGAAAACAGGGAGAGAAATTTTGCCAAGGGGCAAGGCAGGTCTTCTTGTTTAGTAACTTTGGTAGGTTCATCTCCTACTGATGGTAAGTTTGGTAGAATGTCTTGCTCTAGCGGGATTGCGGATAAAAAAAATTTTGGTTATGTGAAAGTGAGAGAAAGTGAAGATGCTAAAAATGAGATCAAGTCTCTCGTCAAGCTCAATCTGAAGGTCCTAAGTAAAGATAAACCATTAGGTGTTGATGCATTCAAAGAAATTGCAAGGCAGTCAACCCACGCCATCCTGGCTGCATGTAAATCAGAGCAACAAGAGTCTGATAGAAGCTCCTCAAGCTCTGTATGTAGTCACAGGGACGATGTTCACCATTTTCACAAGTCCACCTTAATGCCTAATTGTTGCCGACAATGTTTTTACATGTTTGTGAAGAATGTTGTCAACTCCACTTTGACGGAGAAGGTGGGTTGTGATGGATCTTCATGA 1839 0.441 MLGVPDSPNKRLKTQIEEDPNHHLDLRPSSEDNQPDDSCGICYADRGASIRGEIDCCDHFFCFVCIMEWSKHESRCPLCRQRFSAVRRPPKPGVFPSSRLVKVPRRDQVYHVHGNMTTCPVDPYAETHCSVCNGGEDECFLLLCDLCDTASHTYCVGLGYTVPEGDWFCHDCTVSRATNDNNDIDHQFDMPAVEPSVTIHDIVREPNSQVVRRPGPSPFVIPLPDRVNKNDNRNLDSGARTLNRCRNVQHRIQALRENWNALRSGSLSFYSNSSESGVWHGQKQKSDSSTHRKLGQPHLLASASFQQSTIQGSPYGNTSHERGLNDVNKAWKMLERAKMMQKSNHRISILPQGLDHPSRGAGPKKASSIHCNDQELKIQHSRKSTGSEKQYKDSSFSKDKDNCRPPELGEQKQSRVTCKEIMQHIGDQASHLEECCEPSLPEKVPSSIQSAPCHENRERNFAKGQGRSSCLVTLVGSSPTDGKFGRMSCSSGIADKKNFGYVKVRESEDAKNEIKSLVKLNLKVLSKDKPLGVDAFKEIARQSTHAILAACKSEQQESDRSSSSSVCSHRDDVHHFHKSTLMPNCCRQCFYMFVKNVVNSTLTEKVGCDGSS 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0348 612 Pfam PHD-finger 129 174 IPR019787 -
Dere14g0348 612 MobiDBLite consensus disorder prediction 376 415 - -
Dere14g0348 612 Pfam Ring finger domain 37 80 IPR001841 -
Dere14g0348 612 PANTHER F18C1.6 PROTEIN 32 606 - -
Dere14g0348 612 MobiDBLite consensus disorder prediction 273 294 - -
Dere14g0348 612 ProSiteProfiles Zinc finger PHD-type profile. 126 175 IPR019787 -
Dere14g0348 612 SUPERFAMILY FYVE/PHD zinc finger 101 175 IPR011011 -
Dere14g0348 612 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 193 IPR013083 -
Dere14g0348 612 MobiDBLite consensus disorder prediction 1 36 - -
Dere14g0348 612 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Dere14g0348 612 MobiDBLite consensus disorder prediction 11 32 - -
Dere14g0348 612 SMART ring_2 39 79 IPR001841 -
Dere14g0348 612 SUPERFAMILY RING/U-box 28 94 - -
Dere14g0348 612 SMART PHD_3 128 173 IPR001965 -
Dere14g0348 612 MobiDBLite consensus disorder prediction 350 369 - -
Dere14g0348 612 ProSiteProfiles Zinc finger RING-type profile. 39 80 IPR001841 -
Dere14g0348 612 MobiDBLite consensus disorder prediction 376 408 - -
Dere14g0348 612 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 88 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0348 Dere-ChrDere14 3560370 3562895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0348 106 176 C2H2 Transcription Factor Family AT3G01460 30.556 3.38e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere14g0348 PHD 2e-08 CL0390