LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere14g0325	ATGAAGTCGCCCAAATCGCATGCGAGCGAGAACTTGCTCTCTTATCCTGTGAAACCATCATGTCCACGCCTGATAAATCCATATATCAACGATGTCCTCTCTTCTTCTGCTCCTGATCTTACTGCAACTCGGATCTTCAATCGGTTGACTCGTCATCTGTTCACACGTTGGCAGATTTGGGTTCATCTTCCTTCTCGATTCCACCTGGCAAATCAGCGATTTGGTTCTTTGTTCATCCTTATTCACGGCTCTGTTTCAGATCTGATGGATACGATGGACATCGTTGGGAAATCAAAGGAAGATGCTTCCCTTCCTAAAGCAACTATGACAAAAATTATTAAAGAGATGTTGCCCCCTGATGTACGCGTTGCAAGAGATGCACAAGATCTATTGATTGAGTGTTGTGTAGAGTTTATAAATCTTGTTTCATCAGAGTCCAATGAAGTCTGCAACAGGGGGGATAAACGAACAATTGCACCAGAGCATGTATTGAAGGCCTTAGAGGTTCTTGGATTTAGTGAGTACATTGTGGAAGTTTATGCAGCATACGAGCAGCATAAGATTGAGACCATGCAGGACTCTTTAAGAGCTGGCAAGTGGAGTAACGGAGCTGAGATGACAGAGGAAGAAGCATTAGTGGAGCAACAAAGGATGTTTGCAGAGGCGCGTGCTAGAATGAACGGTGGGGCCATTGCTTCCAAGCAGCCAGATGCTGACCAAACTTTAGAGAGCTAA	735	0.4463	MKSPKSHASENLLSYPVKPSCPRLINPYINDVLSSSAPDLTATRIFNRLTRHLFTRWQIWVHLPSRFHLANQRFGSLFILIHGSVSDLMDTMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNRGDKRTIAPEHVLKALEVLGFSEYIVEVYAAYEQHKIETMQDSLRAGKWSNGAEMTEEEALVEQQRMFAEARARMNGGAIASKQPDADQTLES	244

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere14g0325	244	Gene3D	Histone, subunit A	92	231	IPR009072	GO:0046982
	Dere14g0325	244	SUPERFAMILY	Histone-fold	100	231	IPR009072	GO:0046982
	Dere14g0325	244	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	102	167	IPR003958	-
	Dere14g0325	244	PANTHER	PROTEIN DR1 HOMOLOG	89	243	IPR044255	-
	Dere14g0325	244	FunFam	Negative cofactor 2 beta	94	231	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere14g0325	Dere-ChrDere14	3386294	3394024	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere14g0325	89	241	CCAAT-DR1 Transcription Factor Family	AT5G23090	83.007	6.43e-90	261

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YB	Dere14g0325		CBFD_NFYB_HMF	4.1e-21	CL0012