Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0293 ATGACGATTGACGACGAGAGCTCCATATACGTTGGAGGTCTTCCATACGATGCCACCGAAGATACCATTCGCACTGTCTTTGATTTGTATGGCGCCATTATTGATGTCAAGATCATTAATGATCATCGGACTAGGGGCAAGTGCTATTGTTTTGTTACGTTCACAAATCCTCGATCAGCAATTGATGCAATCAATGACATGAATGGCAGAACCATTGATGGGCGTGTGGTTAAAGTAAATGGGGTGAGGACTCGAGGTGGAAGAGCAAATTTTGGTAGAGAACATGTTCATCATATTGCTGATAGGAATGGAGACTGGGATCGTGGTAGAGATCGAAACCGAGATTATGAGCGTGAGAGGGATGGACACAGGAATCGAAATAGTGATTGGTCACGGGAGCGTGATAGGTCTCAAGAGCATGATAGGTCCCGAGACTTTGAGCATGACGGGGATAGAAGATATGACCATACACATTATTATGATCAAGCAAGAGAACCTTTGCTAGATAGAGATCGAAGTCAAGAGGGACATCACGCAGATGATGAACAGGAACACAGCAGAGCACATTGTCAAGCTACAGAAAGGAACTATAACTTAGATTTGGATACAGACAGGAAGATGGATAGGACCAATGATCCTGACAGAAGTTTTGATGGGGACAGAAATGAACACTCGAGGAGAAACAGCAGATTGAATGATACAAAACAACTTAGCATGGATTTTTCATCAGACTCAAATGGTAATCGCAATGATCAGATTGAAGATCAATTAGAGAGGTCAACTGAAAGGCTTGGTCAACTGAAAAAGGAGGTCTCTCAGATGGACGAGAAGTTGCAAGAGAAACGACTTCTTGTTATTGATTTACAAAAGCATTCTAGGAAACTGGAGGATGCATTAATTAATGCTAAGAAACACTCTTCATATCGTCAGATGCAGTTGACCAAGCTGCACAAATGTTTTCTGCAAGTGAAAGATTACACAGAGAGACTAAAAACATGTGAAAAAGAACTTCAGTCTCTGGTTGAAACGGCAATGTCAGAGAGTGATGGTGATGCTATTGGCTTAAAGGATGGACAATACACAAATGGAAATGCATGA 1098 0.4171 MTIDDESSIYVGGLPYDATEDTIRTVFDLYGAIIDVKIINDHRTRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRTRGGRANFGREHVHHIADRNGDWDRGRDRNRDYERERDGHRNRNSDWSRERDRSQEHDRSRDFEHDGDRRYDHTHYYDQAREPLLDRDRSQEGHHADDEQEHSRAHCQATERNYNLDLDTDRKMDRTNDPDRSFDGDRNEHSRRNSRLNDTKQLSMDFSSDSNGNRNDQIEDQLERSTERLGQLKKEVSQMDEKLQEKRLLVIDLQKHSRKLEDALINAKKHSSYRQMQLTKLHKCFLQVKDYTERLKTCEKELQSLVETAMSESDGDAIGLKDGQYTNGNA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0293 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Dere14g0293 365 Coils Coil 113 133 - -
Dere14g0293 365 MobiDBLite consensus disorder prediction 234 250 - -
Dere14g0293 365 SMART rrm1_1 8 80 IPR000504 GO:0003723
Dere14g0293 365 MobiDBLite consensus disorder prediction 102 252 - -
Dere14g0293 365 CDD RRM_SF 9 80 - -
Dere14g0293 365 Coils Coil 250 284 - -
Dere14g0293 365 Coils Coil 323 343 - -
Dere14g0293 365 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 197 - -
Dere14g0293 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Dere14g0293 365 MobiDBLite consensus disorder prediction 198 233 - -
Dere14g0293 365 Gene3D - 2 165 IPR012677 -
Dere14g0293 365 SMART rrm2_1 8 80 IPR003954 GO:0003676
Dere14g0293 365 PANTHER GEO13361P1-RELATED 6 179 - -
Dere14g0293 365 MobiDBLite consensus disorder prediction 102 191 - -
Dere14g0293 365 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0293 Dere-ChrDere14 3014250 3018098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0293 3 79 Eukaryotic Initiation Factors Gene Family AT2G36660 32.468 1.82e-07 51.2