Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0262 ATGAGTTTTGCTGATCATCCTTCTGGCTTCATGCTGTCGCCGCCGCCATTTGCAGCAGACGACGATTCAAATGGTGGGTGGCCGCAATTCCCAATAAACAACGAAGCATTCGATCCACATTCAACATTTGATCAGCTTCCTTCTTTCAAGAGGCCCAGGACTTCCGAGACTAACCAGTTCAATCCCTTGCCATTCCCGCCCATGAATTCCAGGATGCACCATCCACAAAATCCTCCATCTAACAGAGGAGGAGGAACGAGCCACATTTTTTTTAAGACCCGCATGTGTGCGAAATTCAAAATGGGTACCTGCAGGAACGGCGAGAATTGCAACTTTGCACATGGCATTGGGGATATGAGGCAGCCACCTCCAAATTGGCAGGAACTTGTTGGCTTACGCGATGAAGAACGGCCATCTGGAAATTGGGACGACGACCAGAAAATCATACATAAAATGAAGCTGTGCAAGAAGTATTACAATGGCGAGGAATGCCCTTATGGCGAAAGGTGCAATTTTCTTCATGAAGACCCGTCCAAGTTCCGGGATGACGCTGGGAGGTGCAGGGAGAGCTCAGCTATTAGTCTTGTGGCTAATGGATCGCCAAAGTCGCACTTGAATGGCTCCAATAATTCAGATAGTAATAGGGCTGTGGACACAGGGTGCGATGGCCTTCGACCAAATGTGAAGGCTCCGTTCTGGAAGACCAAGTTATGTAGCAAGTGGGAGACAACAGGACAATGCCCTTTCGGTGATAAATGTCACTTTGCCCATGGACAAGCAGAGTTACAAGCACCTGCTGGACGCATTGAAGCAGAAGCTATAGGTTCTTATCCAGTTTCAACAAGAGCTACATCAGTTCCTCTGAATGACGCCTCTCCTACCAACACTGCATGTCTACTTGATTCAAATGAAGAGGAGCAGAAAAGGAAGAGTTTGCTGAAGTGGAAAATAAACAAGAAGATCAATCGAATTTATGGTGATTGGATTGATGGTGTACCATTGCCAAGGTAG 1011 0.4708 MSFADHPSGFMLSPPPFAADDDSNGGWPQFPINNEAFDPHSTFDQLPSFKRPRTSETNQFNPLPFPPMNSRMHHPQNPPSNRGGGTSHIFFKTRMCAKFKMGTCRNGENCNFAHGIGDMRQPPPNWQELVGLRDEERPSGNWDDDQKIIHKMKLCKKYYNGEECPYGERCNFLHEDPSKFRDDAGRCRESSAISLVANGSPKSHLNGSNNSDSNRAVDTGCDGLRPNVKAPFWKTKLCSKWETTGQCPFGDKCHFAHGQAELQAPAGRIEAEAIGSYPVSTRATSVPLNDASPTNTACLLDSNEEEQKRKSLLKWKINKKINRIYGDWIDGVPLPR 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0262 336 SMART c3hfinal6 232 259 IPR000571 GO:0046872
Dere14g0262 336 SMART c3hfinal6 149 176 IPR000571 GO:0046872
Dere14g0262 336 SMART c3hfinal6 90 116 IPR000571 GO:0046872
Dere14g0262 336 MobiDBLite consensus disorder prediction 1 86 - -
Dere14g0262 336 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Dere14g0262 336 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 259 IPR000571 GO:0046872
Dere14g0262 336 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 151 174 IPR000571 GO:0046872
Dere14g0262 336 ProSiteProfiles Zinc finger C3H1-type profile. 149 177 IPR000571 GO:0046872
Dere14g0262 336 SUPERFAMILY CCCH zinc finger 149 176 IPR036855 GO:0046872
Dere14g0262 336 FunFam Zinc finger CCCH domain-containing protein 39 146 178 - -
Dere14g0262 336 Gene3D - 146 182 - -
Dere14g0262 336 Gene3D - 226 264 - -
Dere14g0262 336 Gene3D - 85 121 - -
Dere14g0262 336 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872
Dere14g0262 336 SUPERFAMILY CCCH zinc finger 231 263 IPR036855 GO:0046872
Dere14g0262 336 FunFam Zinc finger CCCH domain-containing protein 85 121 - -
Dere14g0262 336 FunFam Zinc finger CCCH domain-containing protein 227 264 - -
Dere14g0262 336 SUPERFAMILY CCCH zinc finger 88 121 IPR036855 GO:0046872
Dere14g0262 336 ProSiteProfiles Zinc finger C3H1-type profile. 90 117 IPR000571 GO:0046872
Dere14g0262 336 MobiDBLite consensus disorder prediction 27 65 - -
Dere14g0262 336 PANTHER CCCH ZINC FINGER/TIS11-RELATED 51 177 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0262 Dere-ChrDere14 2721307 2723396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0262 232 263 C3H Transcription Factor Family AT1G68200 59.375 7.81e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere14g0262 zf-CCCH 2.1e-11 CL0537