Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0242 ATGTTCGCCGACACAGTGCTCTCTCTCTCCCCCTCCTCTATATCTTCACAACCACACTCTGATCCTTCTGTACTTTGTTCTCTTTCTCTGTGCAAATCACAATCACTTACATCTTATCCTCATTCCATCATGGTGAAATCAAGGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCATGGGTTTCTGAAATTCGCCATCCACTTCTGAAGAGGAGGGTGTGGCTGGGGACATTTGAGACAGCAGAAGAAGCAGCGAGAGCGTACGATCAAGCTGCGATATTGATGAGCGGGCGGAATGCGAAGACCAATTTCCCGATATCTCAGACGCCGGAGGGCGATCCGAAGACGTCGACGGCAAGCCCGGATCAGCGTAAGGAAGGGGCAGCGAATAAGGATCTGGAAGAGATACTGCACGCGAAGCTTAGGAAATGCGGGAAGGTGCCATCGCCGTCCATGACGTGCCTAAGGCTGGACACCGAGAACTCTCACATCGGAGTGTGGCAGAAACGCGCCGGCCACCGTTCTGATAATTCGAATTGGGTGATGACAGTTGAGCTGGGAAACAAGAGCAATGGTAGCAGCATTAATAATAATAGTATGAGTAATGGTAATAGTGGCGCTGAGAAAACGACGTCGTCTAGTGAAGCGTCTCCAATCACGTCAGAAGAAGTGATGATGGGAGTGGGAGGAGGAGGAGGCATGGATGAAGAAGAAAGAATTGCGCTGCAAATGATAGAAGAACTTCTCAACAGAAACTGTCCCAGTCCTGGCCCTTCATTTCATGATATAGTTGAAGAAGGGCATGCTCATGCTCATCATGGTGCCAGCTTTCTCCTTTGA 843 0.497 MFADTVLSLSPSSISSQPHSDPSVLCSLSLCKSQSLTSYPHSIMVKSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPISQTPEGDPKTSTASPDQRKEGAANKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGHRSDNSNWVMTVELGNKSNGSSINNNSMSNGNSGAEKTTSSSEASPITSEEVMMGVGGGGGMDEEERIALQMIEELLNRNCPSPGPSFHDIVEEGHAHAHHGASFLL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0242 280 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Dere14g0242 280 SUPERFAMILY DNA-binding domain 49 108 IPR016177 GO:0003677
Dere14g0242 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 45 205 - -
Dere14g0242 280 MobiDBLite consensus disorder prediction 1 20 - -
Dere14g0242 280 MobiDBLite consensus disorder prediction 103 125 - -
Dere14g0242 280 MobiDBLite consensus disorder prediction 103 130 - -
Dere14g0242 280 MobiDBLite consensus disorder prediction 191 219 - -
Dere14g0242 280 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Dere14g0242 280 Gene3D AP2/ERF domain 48 108 IPR036955 GO:0003700|GO:0006355
Dere14g0242 280 Pfam AP2 domain 49 97 IPR001471 GO:0003700|GO:0006355
Dere14g0242 280 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Dere14g0242 280 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Dere14g0242 280 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Dere14g0242 280 CDD AP2 49 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0242 Dere-ChrDere14 2528939 2530437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0242 44 253 AP2-EREBP Transcription Factor Family AT1G15360 57.674 1.24e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere14g0242 AP2 1.7e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere14g0242 14 2528939 2530437 Dere04g0562 04 5619894 5620609 ECH
Dere14g0242 14 2528939 2530437 Dere14g0242 14 2528939 2530437 ECH