Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0216 ATGTCTTCGCTTAGCAGAGAACTGGTGTTTCTTATACTTCAGTTTCTAGATGAAGAGAAATTTAAAGAGACTGTTCACAAGTTGGAGCAAGAGTCGGGATTTTTCTTTAACATGAGATATTTCGAGGATATGGTCACGAACGGGGAGTGGGATGAGGTGGAGAAGTATTTGTCTGGTTTCACGAAGGTGGATGATAATAGATACTCAATGAAGATCTTCTTTGAGATACGAAAGCAGAAGTACCTTGAAGCATTAGATAAGCAAGATCGATCAAAAGCAGTGGATATTTTAGTGAAGGATTTGAAAGTGTTTGCAGCATTTAATGAGGATCTTTTTAAGGAAATCACACAATTGTTGACTTTGGATAACTTTAGACATAATGAACAGCTATCTAAGTATGGAGATACGAAATCTGCTAGGGGAATAATGCTCGCTGAACTAAAGAAATTAATAGAGGCTAACCCTCTATTTCGTGATAAGCTTCAGTTTCCTACATTGAAGAACTCTAGACTACGGACTCTAATTAACCAGAGTTTAAATTGGCAACATCAACTTTGTAAGAACCCGAGGCCTAACCCTGACATAAAGACCCTATTTGTAGACCATAGTTGTGGACAGCCAAATGGTGCACGGGCTCCATCCCCTGTTACTATGGGTGCCGTGCCAAAGACTGGAGGTTTCCCACCGCTTGGTGCTCATGGTCCATTCCAGCCAACACCAGCTGCTCTTCCAACATCTCTTGCTGGATGGATGGCTAATCCATCCGCGGTTCCACACCCTTCAGCTTCTGCAGTACCTATAGGTTTGACTGTGGCCAATAATGCAGCTATTTTAAAGCGTCCCAGAACTCCTACTAATAACCCAGCTATGGACTATCAAACTGCAGATTCAGATCATGTATTGAAGAGAACAAGACCTTTTGGCATATCAGATGAAGTTAATAATCTATCAGTGAACATGCTGCCTGTTGCATATTCTAGCCAGAGCCATGGTCAGAGCTCCTACTCTTCTGATGATTTGCCCAAGAATGTTATGATGACACTAAGCCAAGGTTCAACTGTCAAAAGTATGGATTTCCATCCACTTCAACAAATTCTACTTCTTGTTGGAACAAACATGGGAGATGTCATGGTGTGGGACGTAGGTAGCCGTGACAGGATTGCTTTAAGAAATTTCAAGGTCTGGGACCTTGGAGCATGCTCGATGCCTCTTCAGGCATCTCTGGCCAACGATTACACAACTTCAGTGAACTGTGTGATGTGGAGTCCTGATGGAACGTTTTTTGGTGTTGCTTATTCTAAACATATTGTGCACATATATTCCTATCATGGTGGGGATGATCTTCGAAACCACCTAGAGATTGAGGCACATGTTGGGAGTGTCAATGATCTTGCTTTCTCTTTTCCAAACAAACAGCTTTGTGTTGTTACCTGTGGAGAAGATAGGGTCATCAAGGTATGGGATGCAGTCACTGGTGCAAAGCAGTATACTTTTGAGGGTCATGAAGCACCTGTTTATTCTGTATGCCCTCATCACAAAGAAAATATTCAGTTCATCTTTTCAACTGCAACTGATGGAAAAATAAAGGCTTGGTTGTATGATAACTTGGGTTCTAGGGTTGATTATGATGCACCTGGCCATTCATCTACCGCAATGGCATATAGTGCTGATGGAATGAGGTTGTTTTCATGTGGTACAAACAAAGAAGGGGAATCATTTCTAGTGGAATGGAATGAAAGTGAAGGAGCTGTGAAGCGTTCGTATCATGGTCTTGGGAAGAGATCTGTGGGTGTTGTGCAATTTGATACCACTAAGAATCGGTTCTTAGCTGCTGGTGATGAGTATATGATCAAATTCTGGGACATGGATAATACAAACTTGTTGACAAGTGTTGATGCAGAGGGTGGATTACAGGCTTCTCCTTGTATAAGATTTAACAAGGAAGGAATACTATTGGCTGTCTCCACAAATGACAATGGTATTAAAATTTTAGCAAATGCAGATGGAATTAGGCTACTTCGGACAGTGGAGAATCGTACATTTGATGCTTCTAGAGTTGCTACTGCAGCTGTTGTGAAGGCTCAGGCACCTAGCATTGGTACCTTTGCTTCTAACAATGTAACTGTTGGAACAAGCCTTGGTGATAGAGCTCCTCCAGTGGCAGCCCTAGTTGGAATTAATAATGATACTCGAAGTTTAGTTGATGTAAAACCTAGAATTGCTGATGAAGCTGTTGACAAATCTAGGATCTGGAAAGTGACAGAAATCAATGAACTATCACAATGCCGCTCTCTAAAGCTTCCTGATAATTTATCACCGGTGAAGGTTTCTAGATTAATTTATACAAATCAAGGGGTTGCCATTTTGGCATTAGCAGCAAATGCAGTTCACAAGCTTTGGAAATGGCAGAGAAATGATCGGAATCTTAGCGTGAAGGCCACTGCAACTGTTGTACCACAACTTTGGCAACCATCCAGTGGAATATTGATGACTAATGATAAAAGTGATATGAACCCAGAGGAAGCTGTTTCATGTTTTGCACTCTCAAAGAATGACTCATATGTTATGTCAGCTTCAGGAGGGAAAATTTCCCTTTTCAATATGATGACATTTAAGACAATGACTACTTTCATGCCTCCACCCCCAGCTGCGACGTGTCTTGCATTTCATCCTCAAGACAACAATATTATTGCCATTGGCATGGAGGACTCTTCCATACAAATTTATAATGTTAGAGTGGATGAGGTCAAAAGCAAGCTAAAAGGTCATCAGAAGAGAATCACTGGTCTTGCTTTTTCTCATGCTCTAAATGTGCTTGTATCATCTGGAGCTGACTCTCAGATACGTGTTTGGAGCACAGATGGATGGGAATTGAAGGCAAATAAATTCCTGACGATTCCCAATGGACGAGCACCGGCACCCCTTGCTGATACTCGCGTCCAATTTCATCTAGATCAGATACATTTGCTGGCTGTTCACGAAACTCAAATAGCTATATATGAGGCACCAAAGTTGGAATGCTTAAAGCTGTTTGGTCCTCGAGAAGTCAGTTGTACAATCACACATGCTACATATTCATGTGACAGTCAATCAATATATGTGAGCTTTGAAGATGGAAGTATTGGTGTTCTCACTGCTTCAACACTCAGATTAAGATGTAGAATATATCAAACTGCATATCTCCATCCCAATCCAAGCTTGAGAGTGTATCCTCTTGTCATCGCTGCACATCCCTCCGAGCCCAATCAATTTGCCTTGGGACTTACAGATGGTGGAGTGTATGTTCTTGAACCCCTAGAGTCAGAAGGAAGATGGGGCTCTCCTCCTCCAACGGAGAATGGTGCCGGGCCAAGCACTACTTCAGGTGCCACTGTATCTGAGCAACCACAAAGGTGA 3396 0.4196 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKQDRSKAVDILVKDLKVFAAFNEDLFKEITQLLTLDNFRHNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPVTMGAVPKTGGFPPLGAHGPFQPTPAALPTSLAGWMANPSAVPHPSASAVPIGLTVANNAAILKRPRTPTNNPAMDYQTADSDHVLKRTRPFGISDEVNNLSVNMLPVAYSSQSHGQSSYSSDDLPKNVMMTLSQGSTVKSMDFHPLQQILLLVGTNMGDVMVWDVGSRDRIALRNFKVWDLGACSMPLQASLANDYTTSVNCVMWSPDGTFFGVAYSKHIVHIYSYHGGDDLRNHLEIEAHVGSVNDLAFSFPNKQLCVVTCGEDRVIKVWDAVTGAKQYTFEGHEAPVYSVCPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTAMAYSADGMRLFSCGTNKEGESFLVEWNESEGAVKRSYHGLGKRSVGVVQFDTTKNRFLAAGDEYMIKFWDMDNTNLLTSVDAEGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVENRTFDASRVATAAVVKAQAPSIGTFASNNVTVGTSLGDRAPPVAALVGINNDTRSLVDVKPRIADEAVDKSRIWKVTEINELSQCRSLKLPDNLSPVKVSRLIYTNQGVAILALAANAVHKLWKWQRNDRNLSVKATATVVPQLWQPSSGILMTNDKSDMNPEEAVSCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATCLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKSKLKGHQKRITGLAFSHALNVLVSSGADSQIRVWSTDGWELKANKFLTIPNGRAPAPLADTRVQFHLDQIHLLAVHETQIAIYEAPKLECLKLFGPREVSCTITHATYSCDSQSIYVSFEDGSIGVLTASTLRLRCRIYQTAYLHPNPSLRVYPLVIAAHPSEPNQFALGLTDGGVYVLEPLESEGRWGSPPPTENGAGPSTTSGATVSEQPQR 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0216 1131 SUPERFAMILY WD40 repeat-like 348 666 IPR036322 GO:0005515
Dere14g0216 1131 SMART WD40_4 491 532 IPR001680 GO:0005515
Dere14g0216 1131 SMART WD40_4 870 910 IPR001680 GO:0005515
Dere14g0216 1131 SMART WD40_4 581 621 IPR001680 GO:0005515
Dere14g0216 1131 SMART WD40_4 830 867 IPR001680 GO:0005515
Dere14g0216 1131 SMART WD40_4 401 441 IPR001680 GO:0005515
Dere14g0216 1131 SMART WD40_4 537 578 IPR001680 GO:0005515
Dere14g0216 1131 SMART WD40_4 913 952 IPR001680 GO:0005515
Dere14g0216 1131 SMART WD40_4 447 488 IPR001680 GO:0005515
Dere14g0216 1131 SMART WD40_4 341 380 IPR001680 GO:0005515
Dere14g0216 1131 Gene3D - 775 1104 IPR015943 GO:0005515
Dere14g0216 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 454 497 IPR001680 GO:0005515
Dere14g0216 1131 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 920 952 - -
Dere14g0216 1131 SMART Lish 4 36 IPR006594 GO:0005515
Dere14g0216 1131 MobiDBLite consensus disorder prediction 1112 1131 - -
Dere14g0216 1131 Gene3D - 571 688 IPR015943 GO:0005515
Dere14g0216 1131 Gene3D - 314 569 IPR015943 GO:0005515
Dere14g0216 1131 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Dere14g0216 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 920 952 IPR001680 GO:0005515
Dere14g0216 1131 SMART ctlh 34 92 IPR006595 -
Dere14g0216 1131 MobiDBLite consensus disorder prediction 1099 1131 - -
Dere14g0216 1131 SUPERFAMILY WD40 repeat-like 838 1097 IPR036322 GO:0005515
Dere14g0216 1131 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1118 IPR027728 GO:0006355
Dere14g0216 1131 FunFam Topless-related protein 1 321 539 - -
Dere14g0216 1131 Coils Coil 1131 1131 - -
Dere14g0216 1131 Pfam WD domain, G-beta repeat 454 488 IPR001680 GO:0005515
Dere14g0216 1131 Pfam WD domain, G-beta repeat 919 952 IPR001680 GO:0005515
Dere14g0216 1131 Pfam WD domain, G-beta repeat 493 531 IPR001680 GO:0005515
Dere14g0216 1131 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0216 Dere-ChrDere14 2250189 2259214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0216 820 950 Eukaryotic Initiation Factors Gene Family AT2G46290 25.000 5.12e-06 48.1