Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0159 ATGGGTAAGAAAAAGAAGCAAGTAGGAGAATCAAGTGACAATAGGGGAAATCAAAGCAACCAAGCCATATTTTTCCAGCAGTCTTGGTCGGCGGGAGATAATAGCTGTAAAGCTTATGATAAGGACACTAAGGTATTTATATCCATGTCTCAAGAGTTGAAGGATGAAGGGAACAAGCTGTTCCAAAAGAGGGACCTCGAAAGAGCTATGCTAAAATATGAGAAAGCCCTCAAATTGCTTCCAAGAAATCATATAGATGTGTCCTGTCTGCGGAGTAACATGGCCGCATGCTACATGCAGATGGGACTAAGTGAGTATCCAAGGGCCATTCATGAATGCAATTTGGCGCTTGAAGTTACACCAAAGTACGGTAAAGCCTTTTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAACAGGCTGGATTTAGCTCTGAGAGATGTTTGTACCATTTTGAAGATGGAGCCAAATAATATCATGGCATTGGAAATTTCAGAAAGGGTGAAAAATGCTCTTGAGGAAAAGGGATTAAAAGTAGCTGATGCAGTAATTGAGTTTCCTCCAGATCATGCTGAACCTCCTTATGTGCCTCCAGAAGGAATAGTAAAAGAGAAGACACGCAAGAAGAAGAGCAAAAAAGTTGAGTTGATGGCTGCTGATAATACAATTGCAGAAAAGCAAGCTGAGGAGAAGTTGGAAGATAAGAAGGCTGAGGAGAAGTTGGAAGATAAGAAGGCTGAGGAATCTACTGAGGAGATGAAGACTCTGAACAAATCCAAAAAGAAGGCGGCCAAGGAAAAGATTGACAAGAAGAAGGCTGATGTAAAGGAGGTTGTTGAGGAAAAAGTTAATGGTAGAAAGGAAGATGCAGCTACGAAAACAGTGAAACTTGTTTTTGGTGAGGATATTCGATGCGCAGAATTGCAAGTTAATTGCAGCCTCCAGCAGCTAAGGGAAGTTATCAGTGACCGATTTCCAAGCCTAGGAGCAGTTCTTGTCAAATATAGGGACCAAGAAGGTGATTTGGTGACAATCACTTCTGATGAAGAATTAAGATGGGCTGAAAAATCTGCTGCATATCAGAGTTCTATCCGTCTGTACATAGTGGATGCTGATCCTGAGCAGGATCCATTCTTCGAGAAAATTAATGAAAAGAAGGGGCAAAAACCTGACATTAATAATGCACTTGAGAATGGTTATGCAGTTAAAGAAAAGGAAATGATTAGTTCATCTTGCATTGAGGATTGGATAATCCAGTTTGCCCAACTGTTTAAGAACTATGTTGGATTTGAATCTGACAGGTATTTAGATTTTCATGAACTTGGAATGAGGCTCTACTTTGAGGCTTTAGAGGAAACAGTTACAAGCGAAGAAGCACAAGGCATATTTGACATGGCAGGAGCTAAGTTCCAAGGGATGGCTGCTCTGGCATTGTTCAACTGGGGAAATGTTCACATGTCCAGGGCAAGGAAGAAAGTGAATCTCACAGAAGAATCTTCTAAAGAGCATCTGTATGATCAAATAAAAAATTCATATGAATGGGCACAGAAAGAATATAAAAGAGCAGGTGAAAAATATGAAGCAGCCATTAAAATAAAATCAGATTTTTATGAAGGCTTCCTGGCACTAGGACAACAGCGGTTTGAGCAAGCAAAACTTTCTTGGTATTATGCAATCAGCTGTAATGTTGATTTAGCAACATGGCCCTCCGCTGAGGCTCTCCAACTTTACAACAATGCAGAGGAAAACATGGAGAGAGGAATGCAGATATGGGAAGAATCTGAAGAGCGACGCCTGAGTGAAGCCTCTAAATCAAAGGATGTCAAACTACATTTGCAGAACATGGGATTGGATGGGCTATTTCAAAATATATCATCCGAGGAAATTGCAGTACAGGCAGCAAATTTGAGGTCTCAAATAAATATCCTTTGGGGCACCATGCTATACGAGCGCTCAATTATGGAATTCAAATTAGGGCTGCCAGTATGGCATGAATCTCTGGAAGTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGCTGTAATGTTGAAGAACCATTGTTCAAATAATACTGCTGCAGAAGGTCTAGGATTCAACATTGATGAAATAGTACAGGCATGGAATGATATGTATGAAGCTAGACGCTGGCGGAGCGGAGTTTCATCATTCCATTTGGAACCCCTATTCAGAAGGCGAGTTTCAAAAATTTATCATGCCTTAGAGCTTGCATGA 2244 0.4082 MGKKKKQVGESSDNRGNQSNQAIFFQQSWSAGDNSCKAYDKDTKVFISMSQELKDEGNKLFQKRDLERAMLKYEKALKLLPRNHIDVSCLRSNMAACYMQMGLSEYPRAIHECNLALEVTPKYGKAFLKRARCYEALNRLDLALRDVCTILKMEPNNIMALEISERVKNALEEKGLKVADAVIEFPPDHAEPPYVPPEGIVKEKTRKKKSKKVELMAADNTIAEKQAEEKLEDKKAEEKLEDKKAEESTEEMKTLNKSKKKAAKEKIDKKKADVKEVVEEKVNGRKEDAATKTVKLVFGEDIRCAELQVNCSLQQLREVISDRFPSLGAVLVKYRDQEGDLVTITSDEELRWAEKSAAYQSSIRLYIVDADPEQDPFFEKINEKKGQKPDINNALENGYAVKEKEMISSSCIEDWIIQFAQLFKNYVGFESDRYLDFHELGMRLYFEALEETVTSEEAQGIFDMAGAKFQGMAALALFNWGNVHMSRARKKVNLTEESSKEHLYDQIKNSYEWAQKEYKRAGEKYEAAIKIKSDFYEGFLALGQQRFEQAKLSWYYAISCNVDLATWPSAEALQLYNNAEENMERGMQIWEESEERRLSEASKSKDVKLHLQNMGLDGLFQNISSEEIAVQAANLRSQINILWGTMLYERSIMEFKLGLPVWHESLEVAVEKFELAGASPTDIAVMLKNHCSNNTAAEGLGFNIDEIVQAWNDMYEARRWRSGVSSFHLEPLFRRRVSKIYHALELA 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0159 747 SMART tpr_5 124 157 IPR019734 GO:0005515
Dere14g0159 747 SMART tpr_5 88 123 IPR019734 GO:0005515
Dere14g0159 747 SMART tpr_5 50 83 IPR019734 GO:0005515
Dere14g0159 747 Coils Coil 224 280 - -
Dere14g0159 747 MobiDBLite consensus disorder prediction 1 20 - -
Dere14g0159 747 SUPERFAMILY CAD & PB1 domains 292 381 - -
Dere14g0159 747 ProSiteProfiles TPR repeat profile. 50 83 IPR019734 GO:0005515
Dere14g0159 747 SUPERFAMILY TPR-like 38 167 IPR011990 GO:0005515
Dere14g0159 747 Gene3D - 289 384 - -
Dere14g0159 747 MobiDBLite consensus disorder prediction 225 266 - -
Dere14g0159 747 CDD PB1 293 367 - -
Dere14g0159 747 ProSiteProfiles PB1 domain profile. 291 370 IPR000270 GO:0005515
Dere14g0159 747 PANTHER PROTEIN CLMP1 2 745 IPR044517 -
Dere14g0159 747 Gene3D Tetratricopeptide repeat domain 48 179 IPR011990 GO:0005515
Dere14g0159 747 SMART PB1_new 291 370 IPR000270 GO:0005515
Dere14g0159 747 Pfam PB1 domain 292 369 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0159 Dere-ChrDere14 1663281 1665602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0159 20 157 Calmodulin-binding Proteins AT3G25230 29.333 1.34e-08 56.2