Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0134 ATGGGTTCGACCAATAGTCGACTGGGGTCTCGCCCTACGACCCCCAGAGTCAACGGCACTAACCGCTTCAGATTGTCCTCTCTTATCTGTGGCGGCTCCGCCTCTCGTTCTACTTATGAGATGGAAGATCAAAGAGATTCTGCAACAGAATTTAATGATGAAAATCAGAAAGTCATCGAGCAGTCATCTTTATCATGTACAGACAATAGAATTAGCTGCAGCCCCCATGCCGAAGCTGCAAGCTTATCTGATACAAGAACTGAGTTGAGTGAGATTGCTACTGTTGAAGGTTCTTCCAGAAATGTTTCAACTAGCAGTCAGAGGAAGTGCTTGTCTGAAAGTAAGGAGTTAGTTCCTCCTCATCAGGTAAGTGCTGATCATAGTCATGATGAATCTTATAGGGATAGATGCAACACAGCTAGTACTTCATTTGTAGAACAACAATCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAAGATGCGGTCAATAATATTGATAGTTCAGTGGGTAGTGATGTTTCTCAAATGTCTAGTGAGACAATGTATCCAAGGAGCTCAACCTCGCAAGAGCATGGAGATTCCAGTTCTAATGAAATTTCTATTGAGAATCACACTGGCACAGTTACAGTTATACAGAATTCTGATTTGGATCATGTTGCCCAGGTTTCCAATTTACCAGTAACTTATGAGCTGCCTGAATCTGAAACTCGTCCTGAGATAATACCTTCAGGTTTAGGTTTTCTGGCATCTCATAGGGAAAGAGAACAGGGAAATGACAGTATGTTACATGTTGATGTTGTCACAATATCGTCCAACATTTTGTCTAGTGGCAATGCTGATGTCAGTGATCATGATGCCAGAAGGGATAGTAGAAGACTATTTTGGGATGCTTTTTCAAGACGTAGTTCCAGAAGATTTGGTGATTCTCCAACCATCGTCTTCTCAGCTGGTGATGCTGATGATCCAAGTTCTCAAGATCGATGGCTTCTTGATTTGAGTCATGATTCCCCAAATCATAGGGTTGGACGTGATTCTGGATACCTGGGCAGTAGAATTCACAGATTGAACGAACGAATGCGGCACTCAAGATCTGAGATTTGGGAAAGACTTCGTGGTGGCCTTGATGGGATTGGTCGTTTGAATCCTTCTTGTCCACTAGGACTCCACCCTGATGGCATGTGCTCATGTGAATCTTTCCCAATGGCTGAGGAATCTGGCACTCGAGCTAGTATATCAAGAATAGCTATGCTTGCTGAAGCTTTATTTGAGGTTTTGGATGAAATCCATCGCCAACCTGTATCACTTTCCCTATCAATGGTCTCTCTCCCAGCGCCAGAATCAATTGTAAATTCGTTCCCTCTCAAGTGTCACAAAAAGGTTGACTCAGCAGATGGTGGCAATGATGCTGAACAGTGTTACATATGCCTGGCTGAGTATGAAGAAGGAGATCAAATACGCGTTCTTCCTTGCAACCATGAATACCACATGTCATGTGTTGATAAGTGGCTCAAAGAAATACATGGTGTATGTCCTCTTTGTCGTGGGAATGTTTGTGGTGTGTCCAACGAGTCTTCTGCCTCTAACACAGAAGTACCATCTCATTGA 1611 0.4302 MGSTNSRLGSRPTTPRVNGTNRFRLSSLICGGSASRSTYEMEDQRDSATEFNDENQKVIEQSSLSCTDNRISCSPHAEAASLSDTRTELSEIATVEGSSRNVSTSSQRKCLSESKELVPPHQVSADHSHDESYRDRCNTASTSFVEQQSSDPVSVNVSANKDAVNNIDSSVGSDVSQMSSETMYPRSSTSQEHGDSSSNEISIENHTGTVTVIQNSDLDHVAQVSNLPVTYELPESETRPEIIPSGLGFLASHREREQGNDSMLHVDVVTISSNILSSGNADVSDHDARRDSRRLFWDAFSRRSSRRFGDSPTIVFSAGDADDPSSQDRWLLDLSHDSPNHRVGRDSGYLGSRIHRLNERMRHSRSEIWERLRGGLDGIGRLNPSCPLGLHPDGMCSCESFPMAEESGTRASISRIAMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESIVNSFPLKCHKKVDSADGGNDAEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGVSNESSASNTEVPSH 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0134 536 SMART ring_2 474 515 IPR001841 -
Dere14g0134 536 MobiDBLite consensus disorder prediction 164 201 - -
Dere14g0134 536 MobiDBLite consensus disorder prediction 1 22 - -
Dere14g0134 536 MobiDBLite consensus disorder prediction 93 134 - -
Dere14g0134 536 MobiDBLite consensus disorder prediction 35 55 - -
Dere14g0134 536 MobiDBLite consensus disorder prediction 93 112 - -
Dere14g0134 536 Pfam Ring finger domain 473 516 IPR001841 -
Dere14g0134 536 MobiDBLite consensus disorder prediction 120 134 - -
Dere14g0134 536 SUPERFAMILY RING/U-box 468 520 - -
Dere14g0134 536 MobiDBLite consensus disorder prediction 39 53 - -
Dere14g0134 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 524 IPR013083 -
Dere14g0134 536 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 535 - -
Dere14g0134 536 ProSiteProfiles Zinc finger RING-type profile. 474 516 IPR001841 -
Dere14g0134 536 FunFam Putative RING zinc finger domain superfamily protein 441 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0134 Dere-ChrDere14 1449335 1453455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0134 293 520 C3H Transcription Factor Family AT5G45290 42.366 1.71e-41 155