Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0109 ATGGTGATCTCTGGTTTGGTCCTTGATCTTTCATCTGGGTCTCTCAAGATGATTCCAGAAGACCAAAAGGGTGATTTGGGTGATGAAAATGCGACCGCAAACAGGTTTCCCGTGGGTATGAGTGTTCTGGCGGTAGACGACGACCCAATTTGTCTCAAAGTGTTGGAGAACCTGCTGCGCAAATGCCAGTATCAGGTTACTACAACTAATCAGGCAATTAAGGCTCTGAAAATGTTGAGGGAAAACAGAAACAAGTTTGACCTCGTCATTAGTGATGTAAATATGCCAGACATGGATGGCTTTAAGCTCCTTGAGCTTGTAGGACTTGAAATGGACCTGCCTGTCATCATGTTGTCAGCACACAGTGATACAAGGCTTGTGATGAAGGGTATTACACATGGTGCATGTGACTATTTGCTGAAGCCTGTTAGAATTGAAGAGCTTAAGAACATATGGCAACATGTGGTCCGAAGAAAGAAGTTTGATGGCAAGGATCAGAATACGGCTTCCCATATGGAGAAGGCAAACACAGCCAGGGAAGAGAATCAAGGCATCATGTCAGAAAATAATTCAGATCAAAATAAAAAGCTGGGTAAAAGAAGGAAGGACCAAGGTGATGATGAGGAAGACGATGTTGAAGATAATGGGCAAGAGAATGAGGAGGACCCATCGACACAGAAGAAGCCTCGTGTAGTTTGGTCAGTTGAGCTGCACAGGAAATTTGTTGCTGCAGTAAATCAACTGGGCCTTGAAAAGGCTGTTCCTAAGAAAATTCTTGACCTGATGAATGTTGATGGGCTTACAAGGGAAAATGTGGCAAGCCATCTGCAGAAATATAGACTCTATCTTAAAAAGACTACCCAACAAGCTAACATAGTTGCTGCATTGGGTGGTAATGATTCATCATACATGCGGATGCGTTCATTGGAGGGATATGGAGAGTTTCGCACCTTATCTGGATCAGGAAGGCTCTCATCGTCATTTGCATCTACTGGAATTTTTAGTAGACTGAACTCACCTGCTGGCTTGAACTTGCGAGGAATTGGTTCTTCTGGACTGATTCGACTCGGTCAGTCTCAAAACGCTAGCACGGCCATAAACACACTTGGAAATCTTCAGCCTTCATCTGTTTTGCCTGCAAATCAAAGTTCGAGTTTATTTGCAGGCATTCCAACACCAATAGAGCTTAGTCAGTCTCAACCAGGCAACTGTGCCTCTGGTATTAGACAGTTAAGTTCAATTGATGATTCATGTGGTTTCACAGTCGCTAGTGGCTTCCTAGACAGTAGAGCAACTGTTGGTAGTGCAAACAATTCTGTGCCAGGTGTCTCAAGTAATCATTTGATTTTACAAGGAAGCTCACAACAATCTCAAAATGTGGAAGAATTTAGAAATGAATCTTCTTTCAGAGCTGCCCCTCTAAACTCAGAAACTTTCAACATTGGCATGTGTGGTTCTAATTTGTTGGACTACACACGATGCAATGAAAGCTGGCGGGGTGTGGCTCCGTTGTCTAAGTTTCCCTCTAATTCTTTGCCATTAAATCAGACTTTCAATAATGATCAACGGCCTCCTAGTAGCTTAAATGTTTCTCCCACAAATACTCACATCGGTAACAACCCAGTTGATTTTTGTTCTGCAAGTGCAATTGCTGTTCCATTGGAGGATCCTATAGGTGAACTGCATTGTCAAGAAGGCTTAATTGGGACTGTGGTTCAGTCTTCAAGTTACACCCCAAGGCAGAGCTGGGAAGTACATAAGCAGAATTACAACCAAAATTTGAATTGTACTCTCAGTTCTGTAAATTCACTGGTGTCTTCTAACGGGGTTACAAATAGCTTGGGGCAGAGTTTAAATCAAAATAATGCAATATGCAGCAGGAGGGTGGATGCATCTTTCATTGACCAATTCAATGGGGCTACCCCATCAATCATTCGGTATAATGGGGTTGAGAAATTCTCTTCAGGTGCGAGGATGAAGTCAAACGATGCCCACATGTTGGAGCAGATGAAGTCCCAAGATGGTTTCATTCGGAATGTTGGATCCTTGGATGACATAATGAGTGGAATGGTTAGAGGGGAACAGAATGAGATGATAATGATGGATGGAGAAACCCGATTTGATGCTTACCCTATTGGATTTTGTATCTGA 2151 0.4282 MVISGLVLDLSSGSLKMIPEDQKGDLGDENATANRFPVGMSVLAVDDDPICLKVLENLLRKCQYQVTTTNQAIKALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTRLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKFDGKDQNTASHMEKANTAREENQGIMSENNSDQNKKLGKRRKDQGDDEEDDVEDNGQENEEDPSTQKKPRVVWSVELHRKFVAAVNQLGLEKAVPKKILDLMNVDGLTRENVASHLQKYRLYLKKTTQQANIVAALGGNDSSYMRMRSLEGYGEFRTLSGSGRLSSSFASTGIFSRLNSPAGLNLRGIGSSGLIRLGQSQNASTAINTLGNLQPSSVLPANQSSSLFAGIPTPIELSQSQPGNCASGIRQLSSIDDSCGFTVASGFLDSRATVGSANNSVPGVSSNHLILQGSSQQSQNVEEFRNESSFRAAPLNSETFNIGMCGSNLLDYTRCNESWRGVAPLSKFPSNSLPLNQTFNNDQRPPSSLNVSPTNTHIGNNPVDFCSASAIAVPLEDPIGELHCQEGLIGTVVQSSSYTPRQSWEVHKQNYNQNLNCTLSSVNSLVSSNGVTNSLGQSLNQNNAICSRRVDASFIDQFNGATPSIIRYNGVEKFSSGARMKSNDAHMLEQMKSQDGFIRNVGSLDDIMSGMVRGEQNEMIMMDGETRFDAYPIGFCI 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0109 716 Pfam Response regulator receiver domain 42 150 IPR001789 GO:0000160
Dere14g0109 716 MobiDBLite consensus disorder prediction 162 178 - -
Dere14g0109 716 Gene3D - 40 178 - -
Dere14g0109 716 SMART REC_2 40 152 IPR001789 GO:0000160
Dere14g0109 716 FunFam Two-component response regulator 224 287 - -
Dere14g0109 716 Pfam Myb-like DNA-binding domain 230 280 IPR001005 -
Dere14g0109 716 NCBIfam myb-like DNA-binding domain, SHAQKYF class 228 281 IPR006447 GO:0003677
Dere14g0109 716 PANTHER TWO-COMPONENT RESPONSE REGULATOR 40 360 IPR045279 GO:0009736
Dere14g0109 716 MobiDBLite consensus disorder prediction 162 229 - -
Dere14g0109 716 SUPERFAMILY CheY-like 39 165 IPR011006 -
Dere14g0109 716 ProSiteProfiles Response regulatory domain profile. 41 156 IPR001789 GO:0000160
Dere14g0109 716 CDD REC_typeB_ARR-like 42 156 - -
Dere14g0109 716 PIRSF RR_ARR_type-B 19 715 IPR017053 GO:0003677|GO:0003700|GO:0009736
Dere14g0109 716 SUPERFAMILY Homeodomain-like 225 285 IPR009057 -
Dere14g0109 716 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 225 284 IPR017930 -
Dere14g0109 716 Gene3D - 224 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0109 Dere-ChrDere14 1202080 1205956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0109 34 457 Response Regulator Gene Family AT2G25180 50.922 1.26e-125 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dere14g0109 Response_reg 4.9e-25 CL0304