Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0094 ATGCCTTATCCCTTTTTAGACATCCATGGCCAGCCAAATGTCAAACATCACCCATTCATCAAACATTTGGTTTGCAATCGTAAATTGCCAGCAAAGACATCACCCATTCTCGACCCTTTGATTTTCACGAACCCCTTAACTTTCAATTTTTCTGACGTCGTCACCAAAGATGAATGTTTTCCTCCTTCCAACCTAGTCGACAACCTGGTGCTTCCGAGATCTGTCGCCTCCATCTCATTCCGTTTCACCAGGAAGGGCAAACTTTTAGGCACTAGAAAATGTCCGGTTAATGAGATAGAAGAAGCGCCTTTAGCACCTGCTGAGGCTTCAGCACCCCTAGGCGAGACTTTGGACATCATGACAGCCTTACAGCTTGTACTGAGGAAGTCACTAGCTCATGGTGGGCTAGCCCGAGGGCTACACGAAGGTGCTAAGATGATTGAAAAGCATGCTGCACATCTCTGTGTGTTAGCTGAGGACTGTGACCAGCCAGATTATGTTAAATTGGTCAAGGCACTTTGTGCTGACCACAGTATCAAGTTGTTGACAGTTCCTAGTGCTAAAACTCTTGGTGAATGGGCTGGTTTGTGCAAGATTGATTCTGAGGGCAAAGCCAGGAAAGTAGTTGGTTGTTCTTGTGTTGTTGTGAAGGACTTTGGAGAGGAATCACCAGCATTGGATGTTGTTCAGCAATATATCAAATCTCAGTAA 711 0.4529 MPYPFLDIHGQPNVKHHPFIKHLVCNRKLPAKTSPILDPLIFTNPLTFNFSDVVTKDECFPPSNLVDNLVLPRSVASISFRFTRKGKLLGTRKCPVNEIEEAPLAPAEASAPLGETLDIMTALQLVLRKSLAHGGLARGLHEGAKMIEKHAAHLCVLAEDCDQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESPALDVVQQYIKSQ 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0094 236 PANTHER 40S RIBOSOMAL PROTEIN S12 109 235 - -
Dere14g0094 236 Gene3D - 105 236 IPR029064 -
Dere14g0094 236 ProSitePatterns Ribosomal protein S12e signature. 122 140 IPR000530 GO:0003735|GO:0005840|GO:0006412
Dere14g0094 236 FunFam 40S ribosomal protein S12 104 236 - -
Dere14g0094 236 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 122 215 IPR004038 -
Dere14g0094 236 PRINTS Ribosomal protein S12E family signature 206 219 IPR000530 GO:0003735|GO:0005840|GO:0006412
Dere14g0094 236 PRINTS Ribosomal protein S12E family signature 181 202 IPR000530 GO:0003735|GO:0005840|GO:0006412
Dere14g0094 236 PRINTS Ribosomal protein S12E family signature 140 156 IPR000530 GO:0003735|GO:0005840|GO:0006412
Dere14g0094 236 PRINTS Ribosomal protein S12E family signature 126 139 IPR000530 GO:0003735|GO:0005840|GO:0006412
Dere14g0094 236 SUPERFAMILY L30e-like 118 234 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0094 Dere-ChrDere14 1061573 1065243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0094 115 236 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 75.410 1.18e-65 198