Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2123 ATGAACAGAATCAGACGAACCGGCAGCATTCCTTCACGCCATCTTCCTCAACGGCTCCGGCAGCAGCACCACCTCATAGGAAACGGAGAAATCAACCTGGAACCCCAGGCAAATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAGAGGGAGCAAAACCTACAGCTGCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGACTACAAAGGAGCCAAAGAGAAAGGTTTATCTGTGCCCAGAGCCCACATGCGTCCACCATGAACCTTCAAGGGCTCTGGGTGACCTCACTGGAGTTAAGAAGCACTACTCTCGCAAGCATGGCGAGAAGAAGTGGAAGTGCGACAGGTGCTCCAAGAAATATGCTGTTCAGTCGGATTGGAAAGCCCATTCCAAGACTTGTGGCACCCGAGAATATAGATGTGACTGTGGCACTCTCTTCTCCAGACGAGACAGCTTCATCACCCACAGGGCCTTTTGCGATGCCTTAGCTCAAGAAAGTGCAAGACAACCACCCAACCTTTATGGAAGTAGAAGCGTGGCGGTGGGTCCAGAAGCTGAGATGATGTCCTGCATAGCCATACATGACCATGACCATGACCAGAACCAAAACCACCAGTTTAGTGGCCGGACCAAGCAGTTTGACCACCTTCTCCCACCAATATCCCATTCCCACCTGCCTTCTCCTGCCTTGTTCATCCCAGAACCAAATCAAAGCTTATTCCACCACCACTCTCATCATGGATCGGTGCAAAACAACACAAACAATAATTCTGCGCCTGGGACTGCACCCAACCTCTATAATCCTCCCTTCCTCTCCAATTATGATATTGGAATTAGCGGCAACAATGAAGGGTTGAGTCTATTGTCTTCTGCAGCAATAGCAGGTACTATTATGGGAATGGGCAATATTCCCCAGGCAAGCTCTATTACCTCTTCTTCTTTCACCACATCTCTCCAAATCCCTCAATCTCAAAATTCAGCAACCGCACTGCTTCAGAAAGGCGCACAAATGGGTGCCAGTTCCAGCAGCAACACTTCTGCCTCGCTGCTCGTCGGAACCTCGGGATCAAGCGCTTCTTCTAGCTGTTCATCCAGATCTGCCGCACACTATGGCGCCAATATTTTCGGACGAACCCACCCTTATCATTTTGAGCAAAGTAACCTGCAAGACCTCATGAACTCTTCCCTTTTCCAAGGTTTTACTGGGTTTAGTCATGCTGATCGAGGATATTATGATCATGATTCCAACAGTGCTGGCGACCCAAAACTGCAAACCATGGGCGTTAGGGGAAGCTCCGGCAGGCTCACTAGGGACTTTCTAGGTGTTGGGCAGATGGTCAGAAGCCTGAGTTCACAAACAGATCAACGACAGCAACCCCACCAGAGAAACGCTGGTGGAAATTTTCAGTTTAGTGACTAA 1485 0.4936 MNRIRRTGSIPSRHLPQRLRQQHHLIGNGEINLEPQANPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHEPSRALGDLTGVKKHYSRKHGEKKWKCDRCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLYGSRSVAVGPEAEMMSCIAIHDHDHDQNQNHQFSGRTKQFDHLLPPISHSHLPSPALFIPEPNQSLFHHHSHHGSVQNNTNNNSAPGTAPNLYNPPFLSNYDIGISGNNEGLSLLSSAAIAGTIMGMGNIPQASSITSSSFTTSLQIPQSQNSATALLQKGAQMGASSSSNTSASLLVGTSGSSASSSCSSRSAAHYGANIFGRTHPYHFEQSNLQDLMNSSLFQGFTGFSHADRGYYDHDSNSAGDPKLQTMGVRGSSGRLTRDFLGVGQMVRSLSSQTDQRQQPHQRNAGGNFQFSD 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2123 494 MobiDBLite consensus disorder prediction 469 494 - -
Dere13g2123 494 SMART c2h2final6 98 128 IPR013087 -
Dere13g2123 494 SMART c2h2final6 133 153 IPR013087 -
Dere13g2123 494 SMART c2h2final6 57 79 IPR013087 -
Dere13g2123 494 Gene3D Classic Zinc Finger 37 107 - -
Dere13g2123 494 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
Dere13g2123 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Dere13g2123 494 Gene3D Classic Zinc Finger 108 190 - -
Dere13g2123 494 Pfam Zinc-finger double-stranded RNA-binding 57 79 IPR022755 -
Dere13g2123 494 MobiDBLite consensus disorder prediction 249 286 - -
Dere13g2123 494 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Dere13g2123 494 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Dere13g2123 494 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 32 479 IPR031140 -
Dere13g2123 494 MobiDBLite consensus disorder prediction 264 286 - -
Dere13g2123 494 FunFam protein indeterminate-domain 12-like 36 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2123 Dere-ChrDere13 28627600 28631259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g2123 38 195 IDZ Gene Family AT2G02070 91.772 4.01e-107 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere13g2123 zf-C2H2_jaz 2.9e-05 CL0361