Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2116 ATGATGGAACTTATGGTGACAAGGTCTTGTGTTTTCTTTGTAATTGTTATCTCTGCTCTCTCTTTCCAACTTGTTAGATCAAGAGATGATGATGCCCAAGCACTTATAGCACTCAAATCCTCCATTGATGTTCACAATACACTTCCATGGCAAGCAGAAAGCAAGAATGTCTGCAACTGGGAAGGAGTCAGGGATTGCTTCAATGGAAGAGTCAGAAAGCTAGTGCTAGAGAACTTGAACTTAACAGGCACTTTGGACCCCAAGATCTTGAACCGATTGGATCAAATTCGAGTACTCAGTTTCAAAGGTAACTCACTCTCTGGTCCAATCCCTGACCTCTCTGCCTTGGCCAATCTCAAATCCATATTCCTCAACGACAATAACTTCTCCGGTGACTTTCCCGCCTCTATCTCCGGCCTACACCGTGTCAAAGTCATAGTTCTCTCCCATAACCGACTCTCGGGCGACATCCCGGCGTCGCTGCTCAAACTCCGGCGTCTCTACATCCTTTACTTGCAAGACAACGTGTTCACGGGACCCATCCCCGGTTTCAATCAAACCAGTCTCCGATACCTGAACCTCTCCAACAACCAACTTTCCGGCGAGATCCCGGTGACCTCGGCGCTGATCCGTTTCAATACGTCGTCGTTCTCAGGAAACCCAGGGCTGTGCGGTGAACAGATTCACAAGGGATGCGAAATGCCTCCCCCGGTAAGCCCGAGTTATCCCTTAATACCAGGGAGGACCCAGCCGTCGTCGTCGTCGTCGTCGTGGTCATCCAGGCGCAAGAAATTGATGAAAATAATAGGAGGGAGTGTTGGAGGGTTCGTGCTGCTTCTGATATGCTTACTTCTGATATGGATGATATGTAGGAATTGTAGGAAAGGGAAGGCATCAAGGAGAATGAGCGGAAAAGGAGAAGAGGGAGCAGGGGCAGCGACAACAGCAGCCACAGGGACGGAGGGCGGGAGTGGCAGAGGAGGTAATAATGGGGGAAAACAAGGGGGGTTTTCATGGGAAGGTGAGGGACTAGGGAAGTTGGTGTTCTGCGGAGCAGGGGATACGGAGATGAGTTATAGTTATAGCCTGGAGGATTTGCTAAAGGCGTCGGCAGAGACATTGGGGAGGGGTAGTATGGGAAGCACATATAAGGCAGTGATGGAGTCCGGGTTTATAGTGACGGTGAAAAGGCTAAAGGATGCGAGGTACCCTGGGTTGGAGGAGTTCACAAGACAGATGCATCTACTAGGGAGGCTTAGGCACCCTAATCTGGTCCCACTTAGGGCTTATTTCCAGGCTAAGGAGGAACGCCTTCTTGTTTATGATTACTTCCCCAATGGCAGCCTCTTCTCTCTCATCCATGGATCAAAAACTTGTGGTGGGGGAAAGCCTCTTCACTGGACATCTTGCCTTAAAATTGCTGAAGACCTAGCAACTGGACTTCTCTATATCCACCAGAACCCTGGCTTGACCCATGGAAACCTGAAATCTTCTAATGTGTTGCTGGGTTCCGACTTCGAGTCTTGCCTTACGGATTATGGTCTCCAAGTGTTCCTTAATCCGGATTCACCGGAAGAACCCAGTGCCACCACTTTATTCTACAGAGCACCTGAATGCCGTAGCATCCGAAGGCCTCCCACTCAACAAGCTGATGTATACAGCTTCGGGGTGCTTCTCCTGGAGCTCTTGACGGGGAAAACACCCTTCCAAGACCTTGTTCAGGAACATGGCTCGGATATACCCAGGTGGGTTCGGTCTGTGCGTGAAGAAGAGACAGAGTCCGGGTCCGGGGATGACCCTACCTCAGGGAATGAAGCATCCGAAGAGAAGCTTCAGGCACTTTTGAACATAGCAATGGCGTGTATTTCACTGGTTCCGGAAAACAGACCAACAATGAGAGAAGTTTTAAAGATGATAAGAGATGCAAGGGCAGAGGCTCAAGTGTCATCAAACAGTAGTGATCATTCACCAGGTAGATGGTCTGATACTGTTCAAAGCTTACCTCGGGAAGAGCATTTGAGCATATGA 2028 0.4946 MMELMVTRSCVFFVIVISALSFQLVRSRDDDAQALIALKSSIDVHNTLPWQAESKNVCNWEGVRDCFNGRVRKLVLENLNLTGTLDPKILNRLDQIRVLSFKGNSLSGPIPDLSALANLKSIFLNDNNFSGDFPASISGLHRVKVIVLSHNRLSGDIPASLLKLRRLYILYLQDNVFTGPIPGFNQTSLRYLNLSNNQLSGEIPVTSALIRFNTSSFSGNPGLCGEQIHKGCEMPPPVSPSYPLIPGRTQPSSSSSSWSSRRKKLMKIIGGSVGGFVLLLICLLLIWMICRNCRKGKASRRMSGKGEEGAGAATTAATGTEGGSGRGGNNGGKQGGFSWEGEGLGKLVFCGAGDTEMSYSYSLEDLLKASAETLGRGSMGSTYKAVMESGFIVTVKRLKDARYPGLEEFTRQMHLLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSKTCGGGKPLHWTSCLKIAEDLATGLLYIHQNPGLTHGNLKSSNVLLGSDFESCLTDYGLQVFLNPDSPEEPSATTLFYRAPECRSIRRPPTQQADVYSFGVLLLELLTGKTPFQDLVQEHGSDIPRWVRSVREEETESGSGDDPTSGNEASEEKLQALLNIAMACISLVPENRPTMREVLKMIRDARAEAQVSSNSSDHSPGRWSDTVQSLPREEHLSI 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2116 675 Gene3D Phosphorylase Kinase; domain 1 354 443 - -
Dere13g2116 675 FunFam Nuclear pore complex protein NUP107 28 183 - -
Dere13g2116 675 Pfam Leucine rich repeat N-terminal domain 29 64 IPR013210 -
Dere13g2116 675 Pfam Protein kinase domain 371 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g2116 675 MobiDBLite consensus disorder prediction 646 675 - -
Dere13g2116 675 Gene3D Ribonuclease Inhibitor 186 235 IPR032675 -
Dere13g2116 675 MobiDBLite consensus disorder prediction 300 337 - -
Dere13g2116 675 SUPERFAMILY L domain-like 29 225 - -
Dere13g2116 675 MobiDBLite consensus disorder prediction 583 606 - -
Dere13g2116 675 Gene3D Transferase(Phosphotransferase) domain 1 444 663 - -
Dere13g2116 675 Pfam Leucine rich repeat 118 175 IPR001611 GO:0005515
Dere13g2116 675 SUPERFAMILY Protein kinase-like (PK-like) 372 639 IPR011009 -
Dere13g2116 675 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 646 IPR046959 -
Dere13g2116 675 Gene3D Ribonuclease Inhibitor 28 185 IPR032675 -
Dere13g2116 675 ProSiteProfiles Protein kinase domain profile. 368 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g2116 675 MobiDBLite consensus disorder prediction 239 258 - -
Dere13g2116 675 ProSiteProfiles Leucine-rich repeat profile. 188 210 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2116 Dere-ChrDere13 28447527 28450867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g2116 4 675 Receptor kinase-like Gene Family AT1G60630 60.641 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Dere13g2116 Pkinase 7.7e-37 CL0016