Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2107 ATGGTGGTGATCATGCAGCAGCAGCAGCAGAATCCCTCTGCACTGGTGCCACAGCTCAACAACAATCCTCAGTCCTCCTCTGCCACCACCAACACCTCCCTTAGGTCACCGCCTTCTGCAACACCACCAACCCAGTCCCAGTTATCTTCCTCACTCCCTGTTGCTCCACTCTCCACTCCCCTCCGCCAAACTCTGCTGCCATCACTGCCTCTCGATCATGCAATTGGACCGGTGTTGCCCATAACAGCGGCGCACCCATCTGGTGAGCCCGCTTTGACGGCGCCGCCGGCATGCCCCTTGCCGAGAGTCCGGCTCTCGGATATTGCCCAGTATGATGGAGCTCCAGCAGGGTCCTATGTCAGAGCAGTGGAAGCACTGTCTGGGTCTTTGATGAGGCATAATGCAGCGTTGATCGAATTGGGGAGCGAGGATACTGCTTTGCTGAGGTGTGGATTGGAAGGTTCGAGGTTGTTTTTTAGGAGCAGGGCCCATCAGGGTGGTGGGAAGGGAAACCGTGGGGTTCACATGTACAGGGCAGGAAGGGCTTTGGAAGACTGGGATTCATCTCCCCCATGCATGGCTGATATTTTTAGGTGCATGGGAAAGGCAGCTCGTTCTGCTCTGTGTGCCATTGCAAGACATCTCCGTCTTCGAAGCGATGTTTTTAACCATTTGCTTGATGATACTCCGTTGCCTGCTAATGAGGTGTCCTCATCAGTTCTTGTTGCAACCTATTCACACACTTCTTTGCCAAATGGAAAAGGTGCTATTGGAGGTGGTAAGCCAACCGTGAATGGTGAAGTTGAGAAGGGTTTGTTGACATTGATATCTTCAGACACTCCTGGTCTTCAGGTATGTGATCCCAATGGCCGCTGGTATCTGGCAGATAGTGGGTCTGGTCCTGGGGATCTTTTACTGCTTACAGGCAAGGCACTTAGCCATGCCACTGCAGGCCTTCGTCCTGCCGCATCATATAGAGCTTCTCCTGATTATTTTCTAGGCACTAACAGTGGAAGGACATCTCTTGCATTTAGACTCATGCCACAGGGCAATGCTATATTGGATTGTTCTCCAATTGCAGCAGCTGGCCATGTTATTCCTCAAAGCTATGTTCCAATTTCTGTAAGCCAGTTTATGGATGACCTTTCTGCTGAAGAAGAAGTCATAGGCAGCCAGTCTTATAATACTTATGTTGCTGGAAACAATGTGAATAAGGAACAGTCATTGAGAAGTGTTCTATCAGATCCTTTGTCTGGCACATACCTTGAAGATGCCATGCTTGTCTCATGTGGGCATTCATTTGGTGGTCTCATGCTGAGGAGAGTCATTGAAACCTCAAGATGTACTCTCTGCAGTGCAGACATTGAGCCCGGTTCTTTGATCCCTAATTTTGCACTAAGAGCTGCAGCCACAGCAGTCAAGCATGAGGATTATCGAAGGTTATTTCATAATGCTGTTCTCCGAAAGCGGCGGAAAGAAATGGGCGATCAAATGGATTCATTGAGAAGAACAAACAGGGAAAATGGAGATGTTACTGTTGATGATGGACATCACCGGGGAGTGCAGTATCCATTTTCAGTGAATGAGAAGGTGATAATTAAGGGCAATAGGAGAACACCAGAAAAATTTGTTGGTAAAGAAGCTGTCATTACATCTCAGTGTCTTAATGGCTGGTACTTGCTGAAGATTATCGGAACTGGAGAGAATGTGCGCCTGCAATACCGTTCTCTTAGGAAGCTATTGAACTCACCAGCTGTAGAGGATCAGCGTCCGTCACAGTCACAGCCAATTCAAAATAGCAGCTCTTAA 1809 0.4859 MVVIMQQQQQNPSALVPQLNNNPQSSSATTNTSLRSPPSATPPTQSQLSSSLPVAPLSTPLRQTLLPSLPLDHAIGPVLPITAAHPSGEPALTAPPACPLPRVRLSDIAQYDGAPAGSYVRAVEALSGSLMRHNAALIELGSEDTALLRCGLEGSRLFFRSRAHQGGGKGNRGVHMYRAGRALEDWDSSPPCMADIFRCMGKAARSALCAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSHTSLPNGKGAIGGGKPTVNGEVEKGLLTLISSDTPGLQVCDPNGRWYLADSGSGPGDLLLLTGKALSHATAGLRPAASYRASPDYFLGTNSGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEEEVIGSQSYNTYVAGNNVNKEQSLRSVLSDPLSGTYLEDAMLVSCGHSFGGLMLRRVIETSRCTLCSADIEPGSLIPNFALRAAATAVKHEDYRRLFHNAVLRKRRKEMGDQMDSLRRTNRENGDVTVDDGHHRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKLLNSPAVEDQRPSQSQPIQNSSS 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2107 602 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 477 IPR013083 -
Dere13g2107 602 Gene3D - 159 385 IPR027443 -
Dere13g2107 602 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 98 593 - -
Dere13g2107 602 MobiDBLite consensus disorder prediction 1 54 - -
Dere13g2107 602 SUPERFAMILY RING/U-box 409 474 - -
Dere13g2107 602 SUPERFAMILY Clavaminate synthase-like 186 358 - -
Dere13g2107 602 Coils Coil 484 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2107 Dere-ChrDere13 28357747 28368890 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g2107 409 587 Plant U-box Gene Family AT5G05230 41.436 3.01e-39 145