Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2106 ATGGCATGTAAATTGTACGTATCAGTAACTGAATTGGATCATAAATTCTATTATTTTTCCCCCCATAATCGAGTGTTGTGTACAATTTTTTGCGATACTTGTATATTAGCCAACTTTGGCCTCCAACCCGAACGGGGGTTCCATCTTTTACATAATCAATTTAGATGGGGTTCTCTCATGGCTACTGTTAGATTGGATGACACTGTTAGAGCTTTGAGTTCAAGACTGTCTCAATTTATTTCTCCGAGCGGGATATCTCCACCGTCTGAGGGGCTAGAATCTGTTGTGTGCGTGCGTGAGTTCTGCCGCTCAAAAGTTTCTCTGATCGGTTTGAACTTGGATAAAGGAATACTTTACATAATGAGTACTCGGCAACTCAGGGGGGCTTCTGTCAGAAGTTACCGGCGGAGGAAGACAGCTTTGGACTTTGACCTAAACCGTGCCCCGCCTGGTGAGAATCGGGAGCAGGAGGGACCTTCAAATGAGCTGAGACCTCAAGAAGTTCAAGCTAGCCGTCAACCGCAGGTTGTGGAACCTGCAATGATTGATGTTGAGGCCATAGATGATGATGTTGTTGAATCTTCCCCGCGGGCATTTGCTGAGGCTAAAAACAATTCAAGAAGAAATCGAGGGAGGGCTATAGTTGATGTGGATTTAGAAGATCGGACTAGGGTAACTAATAATAATCGCAACAAGCGCAGAAGAGATTCTCCAAGCCGAACAATTATTAATTGTGATCTTTATATAAACTTGGAAAGCGGTAGCAGTTCTATGAGAGAAAATGTTAGGAAGTCTCCTGAACCTCGAAAGGAGCCCGTCTTTAACTGTCCAATATGTATGGGTCCTTTGGTAGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAGTTGCATTAAGGCTGCAATAAACGCTCAGGGTAAATGCCCTACCTGTAGAAAAAAGGTTACGGCAAAAGAGCTCATAAGGGTTTTTCTCCCGTCAACTAGTTGA 996 0.4347 MACKLYVSVTELDHKFYYFSPHNRVLCTIFCDTCILANFGLQPERGFHLLHNQFRWGSLMATVRLDDTVRALSSRLSQFISPSGISPPSEGLESVVCVREFCRSKVSLIGLNLDKGILYIMSTRQLRGASVRSYRRRKTALDFDLNRAPPGENREQEGPSNELRPQEVQASRQPQVVEPAMIDVEAIDDDVVESSPRAFAEAKNNSRRNRGRAIVDVDLEDRTRVTNNNRNKRRRDSPSRTIINCDLYINLESGSSSMRENVRKSPEPRKEPVFNCPICMGPLVEEMSTRCGHIFCKSCIKAAINAQGKCPTCRKKVTAKELIRVFLPSTS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2106 331 MobiDBLite consensus disorder prediction 143 177 - -
Dere13g2106 331 MobiDBLite consensus disorder prediction 143 161 - -
Dere13g2106 331 SUPERFAMILY RING/U-box 271 326 - -
Dere13g2106 331 ProSiteProfiles Zinc finger RING-type profile. 276 314 IPR001841 -
Dere13g2106 331 SMART ring_2 276 313 IPR001841 -
Dere13g2106 331 Pfam Zinc finger, C3HC4 type (RING finger) 275 313 - -
Dere13g2106 331 ProSitePatterns Zinc finger RING-type signature. 291 300 IPR017907 -
Dere13g2106 331 PANTHER ELFLESS, ISOFORM B 122 331 - -
Dere13g2106 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 329 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2106 Dere-ChrDere13 28351877 28357515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g2106 121 330 C3H Transcription Factor Family AT5G48655 51.887 1.74e-52 170