Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2087 ATGCCCGTTGCCCAGCATAAGCAGGTCTGGTGGTCACTGGTTACAATTACCACTGACCGAAAACCCTTAAACCCCTGTCTTCTAGCATTCCTCTGGTTTATGCGGTCCCTGTTTCGAGCATGGACGACTTTGGCAAAAGTTCAGCTCCCAAAGTATTTGGTTTCAAATAATAGAGAGGCTGAGGTTGAACTTGAGAAGCAAGTGAGTGCAAAGAAGCAAAGGAGAGATCGGTTCACGGAAAATCAAAAGAAGGAAAGTAGTTCAGATGATTCCTTTTCTGATTCTGACGAAGACAAGAAACCTGCTGCAAAAGCTGATGTTGCTTCAGAGAAACTACCTGCTAAAAATGGGACTCTATGTACCAGGGTACAGAAAGGCAAGCGAGCTGGCAGTTCCAGCTCTTCTGGATCTGCAGATGATGATTCTTGTTTGAATGATGTGAGTGAGCAGTCCAAGATAGCCCCTGCTTCGGATGAGAGTGGACCTAGTGCTATGAAGAAGAAAGCCGAATCAAGCTCAGATACTGAGAGTAGCTCCTTGGACAAAAATGATTTGAAAACAAAGGTAACCACATTGCCTAAGACGTTACCTGATGCTGGTAAGAAAGAACCTGCTAAGAAAGTTGAGTCAAGTAAAGCCTCAGGTTCAGATTCTGATGGCAGAACTGATGTGGACAATGTAACTACATCATCAAAGAAGTTGCTTGCTGCTTCTGCTGCGAGTAATATAATACCTACTATGAAAGTTGAGTCAAGCAATGACTTATCCCCAGATAGTGGCTTAGATGAGAATGACACACATGCAATACCATCATCCAAAAGGTTGCCTGCTTTTGCAGTTGCTCAAAAGGAGAAAATTGAGAACAATGACAACTCGTATGATGAATCAAGTGAAAGCTTTGACAAAGGCAATGATACAAAGCCTAAGGTTTCAAAAGCAGTCAAGGAAGACATTGAGGAGAAACCTTGCAAAACTCCTCGGAAAGATCCTAAAACAGCAGCTATTTCAAAAGAACAAAATGCCTCATCAAAGACAATATTTGTTGGAAACTTGTCATATAGAGTGGAAAGGGCTGATTTGGAACATTTATTTAAAGATTGTGGAGTAATTGTTAAAATCCGTTTTGGTACTGATCGTGATGGGAGGTTTAAAGGCTTTGGACATGTTGAGTTTGCCACAGAAGAAGCAGCACAAAATGTAAACATTTGTCACATTGTCTAG 1221 0.4161 MPVAQHKQVWWSLVTITTDRKPLNPCLLAFLWFMRSLFRAWTTLAKVQLPKYLVSNNREAEVELEKQVSAKKQRRDRFTENQKKESSSDDSFSDSDEDKKPAAKADVASEKLPAKNGTLCTRVQKGKRAGSSSSSGSADDDSCLNDVSEQSKIAPASDESGPSAMKKKAESSSDTESSSLDKNDLKTKVTTLPKTLPDAGKKEPAKKVESSKASGSDSDGRTDVDNVTTSSKKLLAASAASNIIPTMKVESSNDLSPDSGLDENDTHAIPSSKRLPAFAVAQKEKIENNDNSYDESSESFDKGNDTKPKVSKAVKEDIEEKPCKTPRKDPKTAAISKEQNASSKTIFVGNLSYRVERADLEHLFKDCGVIVKIRFGTDRDGRFKGFGHVEFATEEAAQNVNICHIV 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2087 406 MobiDBLite consensus disorder prediction 244 259 - -
Dere13g2087 406 MobiDBLite consensus disorder prediction 199 219 - -
Dere13g2087 406 MobiDBLite consensus disorder prediction 163 183 - -
Dere13g2087 406 MobiDBLite consensus disorder prediction 67 106 - -
Dere13g2087 406 MobiDBLite consensus disorder prediction 287 334 - -
Dere13g2087 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 346 399 IPR000504 GO:0003723
Dere13g2087 406 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 73 399 - -
Dere13g2087 406 MobiDBLite consensus disorder prediction 67 339 - -
Dere13g2087 406 Gene3D - 279 401 IPR012677 -
Dere13g2087 406 SUPERFAMILY RNA-binding domain, RBD 338 399 IPR035979 GO:0003676
Dere13g2087 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 344 400 IPR000504 GO:0003723
Dere13g2087 406 SMART rrm1_1 345 406 IPR000504 GO:0003723
Dere13g2087 406 MobiDBLite consensus disorder prediction 220 237 - -
Dere13g2087 406 MobiDBLite consensus disorder prediction 125 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2087 Dere-ChrDere13 28071102 28076875 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g2087 346 399 Eukaryotic Initiation Factors Gene Family AT2G23350 40.741 2.76e-06 47.8