Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2086 ATGCCAGCTACTCCAGAAGAAAAACATGCCACATCAAAGACACTATTTGTTGGAAACTTGTCATATAGCGTGGAAAGGGCTGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTCTTGATATCCGTTTCGCTACTGATCATGAAGGGAGGTTTAAAGGCTTTGGACATGTTGAGTTTGCCACAGAAGAAGCAGCAAAAAATGCCCTTATGTTGAATGGGAACGAACTGTTGAGACGTTCTGTCAGGCTTGATATAGCTCCTGAGAGGAGTGCATATTCTCGCAATAGCAAGAACAAGTCATTCCAGAAGGGTGGCAGTGGTCATCCTCAAACTGTATCTGTAAAAGATTTTGATACATCTTTAGGAGAAGATGAGCCTAAAATGCCTGCTGCTTCAATAGAACAACATGCCACATCGAAGACACTATATGTTGGAAACTTGTCATATGGCGTGGAAAGGGCTGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTCTTGATATCCGTTTCGCTACAGATCGTGAAGGGAGGTTTAAAGGCTTTGGACATGTTGAATTTGCCACACAAGAAGCAGCACAAAAAGCCCTTAAGTTGAATGGGAAAGAACTGTTGAGACAATATGTCAGGCTTGATTTGGCTCGTGAAAGGGGTACATATTCCTCCAATAGCAGGAACATTAATGACTCTTTCCAAAAAGGAAGTAGTGTGTCTCAAACAGTGTTTGTAAAGGGCTTCAATACATCATTGGGAGAAGATGAGATAAGATCTAGCTTGGAAGAGCATTTCAGTTCTTGTGGAATGATTTTAAGAATGTCAATTGCTAAAGATTATGACACAGGTGTTGCTAAGGGGTATGCTTGGTTGGACTTCATGGATGTTGATGGCTTCAATAAAGCCCTAAAACTTGATGGAACTAAGGTTGGAGGTTATATCTTGTCAGTGGAGGAAAGAAGACCTCGACGTTATAATCAAGGTGGTAGATGTGGTGGTGATCAATTTGATAAATGGCATAGCGGTGATCAATTTGGTGGATGGCATGGAGGTGGCCCATGGGGCCAAGGAGGAGGTTATGGCAGCAGTGTTGATGACGTCTCCTGGTTGAAGGAGAATTCCTTTTCTCAAGTTCTTTTGATTCTCATAAGAATCAAATGTGGGGGTGGGTTCTTAAATGGCTGTAAGTGTTCAATTGAACTGGTGCCGTTGGACATTAGGACCAACAAGACAAAAAGTGCAACGCACACCATGAAGCAGAAGCAGAAGCAGAGGCAAAAGCTGGGGAAGAAGGCAATGTCACGTCGTCGAACAAACTATGGCTATCCTCATGAGAAAGCTCTGCCATCAAACTCTTGA 1356 0.4174 MPATPEEKHATSKTLFVGNLSYSVERADLENLFKDCGEILDIRFATDHEGRFKGFGHVEFATEEAAKNALMLNGNELLRRSVRLDIAPERSAYSRNSKNKSFQKGGSGHPQTVSVKDFDTSLGEDEPKMPAASIEQHATSKTLYVGNLSYGVERADLENLFKDCGEILDIRFATDREGRFKGFGHVEFATQEAAQKALKLNGKELLRQYVRLDLARERGTYSSNSRNINDSFQKGSSVSQTVFVKGFNTSLGEDEIRSSLEEHFSSCGMILRMSIAKDYDTGVAKGYAWLDFMDVDGFNKALKLDGTKVGGYILSVEERRPRRYNQGGRCGGDQFDKWHSGDQFGGWHGGGPWGQGGGYGSSVDDVSWLKENSFSQVLLILIRIKCGGGFLNGCKCSIELVPLDIRTNKTKSATHTMKQKQKQRQKLGKKAMSRRRTNYGYPHEKALPSNS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2086 451 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 275 403 - -
Dere13g2086 451 MobiDBLite consensus disorder prediction 94 118 - -
Dere13g2086 451 MobiDBLite consensus disorder prediction 94 133 - -
Dere13g2086 451 MobiDBLite consensus disorder prediction 413 433 - -
Dere13g2086 451 Gene3D - 224 364 IPR012677 -
Dere13g2086 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 208 IPR000504 GO:0003723
Dere13g2086 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 82 IPR000504 GO:0003723
Dere13g2086 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 242 312 IPR000504 GO:0003723
Dere13g2086 451 SUPERFAMILY RNA-binding domain, RBD 138 228 IPR035979 GO:0003676
Dere13g2086 451 SUPERFAMILY RNA-binding domain, RBD 240 350 IPR035979 GO:0003676
Dere13g2086 451 Gene3D - 93 223 IPR012677 -
Dere13g2086 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 217 IPR000504 GO:0003723
Dere13g2086 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 89 IPR000504 GO:0003723
Dere13g2086 451 SMART rrm1_1 142 213 IPR000504 GO:0003723
Dere13g2086 451 SMART rrm1_1 241 317 IPR000504 GO:0003723
Dere13g2086 451 SMART rrm1_1 14 85 IPR000504 GO:0003723
Dere13g2086 451 SUPERFAMILY RNA-binding domain, RBD 5 107 IPR035979 GO:0003676
Dere13g2086 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 240 321 IPR000504 GO:0003723
Dere13g2086 451 MobiDBLite consensus disorder prediction 410 451 - -
Dere13g2086 451 Gene3D - 2 92 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2086 Dere-ChrDere13 28028679 28042854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g2086 5 323 Eukaryotic Initiation Factors Gene Family AT1G22760 24.024 2.02e-09 57.8