Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2084 ATGGAGTGGTCCAGGATCAGCCCAGACTTGTACAGCTATAAAATAGTAGTACAAGCTAACCTACAGCGCACAAGGATTAAGGAGCACGCGCCGAGGCACACGTTCTGCGTCCACGAAGCTAGGATTCAACACGAGCAATTTACTCCAAAAAAGCATAATAGGAGTTGGAGAAAAGCAGTAATTTCAATGTACTTGAGGAGAATACAATGCCGAGACTGGAGGTGGGGTGTAGTGCTTCAGTCATCCAAATACTTTATTAGGCCAAGATGCTATGGTCACTCATGCATTCGGTCTCTGTACCCTAAGACTACTGCAGAAGAATATGGTTCACATGATAGCACAATAAGGAGACATCTATTGGGAATTAAATCTAGATGTGCTTCATCTAGTAATAGTTCTTCTGATCTGAACAAAAGGTCTGGTTTATATTTGAATAGTACTCAGTTACGCTTCTACAGTTCAGAAAGTGATGGAAGGAACGCAAGTGAGAATAAACATGTTAATGCAAATGATGGAGCTAACTGTGATAAGGGGAAGATCTGGCAAAATAAGTTTGCAGAAGATGCCAAGCTCTGTAATGTTCATGCTCAACTTGGGGAACAGGATCAAGAGGAGTGGCTCAAAAATGAGAAGATTGCCATTGAAATTAGAAGGAGAGAATCACCCTTTTTAACCAGAAAGGATAAGTTTAAAAATGAGTTTCTGAGAAGGGTTGTTCCTTGGGAGAAAATAAACATATCATGGGACACATTTCCTTACTATATTCATGAGAATACTAAAAATCTTCTGGTGGAATGTGCTGCTTCCCATTTGAAACATAATAAGGTTGCTTCTTCTTATGGTGCTCAGCTCTCTTCTTCAAGTGGGAGAATATTGCTTCAGAGTATTCCTGGCACTGAGCTATACCGAGAGAGATTAGTCAGAGCACTTGCACGAGATCTACAAGTCCCTTTGTTGGTGCTTGATAGCAACATTCTTGCTCCTTATTTTATTGATGATGATTTATCATCAGAATGTGAGTCTGATGATGATAATGCTGAATCTGGGGAGGAGGGTTCTCTGGAGTCACAGGATGAAGATGATAATGATGCTAGCAATGAAGAAGAATGGACTAGCAGTACTGAGGCAAAGTCTGATGCTAGTGATAATGAAGAGCATGATGCACTAGCAACTGCTGAAGCAGCCCTTAAGAAGGTGAAAGCAGCTGTACAGAAACTTGTTCCCTACAACATTGAAGACCTTGAAAAGAGATCATCCGAAGAATCAGCAAATTCTGAGTCAACCAAATCTGAGGATGCCAAGCCTTCTGATCAATCTGGATTCCAATTAAAGAAAGGTGACCGTGTGAAATACATTGGGCCATCTGTTCAAGTGAAAGTCAATAATAGGATCATACTGGGGAAGATATTGACATCTGATGGTCCAACTAATGCTTACACTATTATCCATGGCAGGGCTTTATCGAATGGTCAACGGGGAGAGGTGTATGAGGTGGATGGAGATCAAGTTGCTGTCATCATGGACATTAGTGAAGATAATGCAAAGGAGGGTGACGTTGAGAAGATTAATGATGAACGTACAGAATCACAACTTTGTTGGATACATGTTAAGGACATTGAGCATGACCCTGATGCTCAGGCACAGGATTGCTACATAGCAATGGATGCTCTATGTGAGGTTTTGAATTTGAAGCAGCCTCTTATTGTCTACTTTCCAGACAGCTCACAGTGGTTGCATAAATCAGTTCCGAAGTCAAACAGAAAAGAGTTTTTCCGCAAGGTCCAAGAAATGTTTGATAAGTTGTCTGGCCCAGTTGTGTTGATTTGTGGACAAAACAAAATTCAGTCAGGATCAAAGGAGAAAAAGCAATTTACAATGATACTTCCAAACTTTGGGCGCGTTGGTAAGCTGCCTCTTTCTCTGAAGCACTTGACTGAAGGACTTGGAGCAACAAAGAGATTGGATGATGATGAAATTCACAAGCTTTTCACTAATGTTTTGTGCATACATCCACCTAAGGAGGAGGATCAGCTTGGAACTTTTAAAAAACAACTTGAGGAAGACAGGAAAATTGTGATTTCACGTAGTAGCTTGAATGAACTACACAAGGTTCTTGAAGAGCATGAGCTATCATGCTTGGACCTCTTGCATGTAAATACTAATGGTGTCATTTTGACGAAGCAAAAAGCTGAAAAAGTGGTGGGTTGGGCAAAAAATCATTACTTGTCATCTTGCCTGCTTCCTTCTGTTAAAGGAGAACGATTGTGCCTGCCTCGCGAAAGTCTTGAAATTGCTATCTCAAGATTGAAGGATCAAGAATCTATTTCACGGAAGCCCTCTCAGAGTCTGAAGAACCTTGCAAAGGATGAGTATGAGAGCAACTTTGTTTCAGCTGTAGTGCCTCCTGGTGAAATTGGGGTGAAGTTTGATGACATAGGCGCTCTTGAAGATGTGAAGAATGCGCTTAATGAACTTGTCATTCTTCCAATGAGAAGGCCAGAGCTTTTCTCTCGCGGAAACTTGCTACGGCCTTGCAAAGGAATATTACTTTTTGGTCCTCCTGGAACTGGGAAAACTCTTATGGCCAAGGCACTTGCAAATGAAGCAGGCGCAAATTTTATCAGCATAACTGGTTCAACTTTAACATCAAAGTGGTTTGGAGATGCTGAGAAACTTACCAAAGCCCTTTTCTCCTTTGCTAGCAAGCTTTCTCCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCGCGAGGTGGTGCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAATGAGTTCATGGCAGCTTGGGATGGATTGAGGACAAAAGAGAGTCAAAGAATCCTCATTCTTGGTGCAACGAACAGGCCTTTTGATCTTGATGATGCTGTTATACGTCGCTTACCAAGAAGGATATATGTGGATTTACCAGATGCCGATAATCGAATGAAGATTTTAAGAATATTTCTTGCACAAGAAAATCTGGATCATGATTTTCAGTTTGACAAACTTGCTAACTTGACTGAGGGATACTCTGGCAGTGATTTGAAGAACCTCTGTATTGCTGCAGCATATAGACCTGTTCAAGAGCTCCTTGAGGAAGAAAAGAAGGTGGCCTATAGTGTTCCAGCTCCAGCATTAAGGCCTCTGAAGTTGGATGATTTTATTCAGTCAAAATACAAGGTTGGCCCATCAGTTGCCTATGATGCAGCGAGCATGAATGAATTGAGGAAGTGGAATGAAATGTACGGAGAAGGTGGAAATAGGACAAAATCTCCATTTGGATTTGGGAGCTGA 3306 0.4138 MEWSRISPDLYSYKIVVQANLQRTRIKEHAPRHTFCVHEARIQHEQFTPKKHNRSWRKAVISMYLRRIQCRDWRWGVVLQSSKYFIRPRCYGHSCIRSLYPKTTAEEYGSHDSTIRRHLLGIKSRCASSSNSSSDLNKRSGLYLNSTQLRFYSSESDGRNASENKHVNANDGANCDKGKIWQNKFAEDAKLCNVHAQLGEQDQEEWLKNEKIAIEIRRRESPFLTRKDKFKNEFLRRVVPWEKINISWDTFPYYIHENTKNLLVECAASHLKHNKVASSYGAQLSSSSGRILLQSIPGTELYRERLVRALARDLQVPLLVLDSNILAPYFIDDDLSSECESDDDNAESGEEGSLESQDEDDNDASNEEEWTSSTEAKSDASDNEEHDALATAEAALKKVKAAVQKLVPYNIEDLEKRSSEESANSESTKSEDAKPSDQSGFQLKKGDRVKYIGPSVQVKVNNRIILGKILTSDGPTNAYTIIHGRALSNGQRGEVYEVDGDQVAVIMDISEDNAKEGDVEKINDERTESQLCWIHVKDIEHDPDAQAQDCYIAMDALCEVLNLKQPLIVYFPDSSQWLHKSVPKSNRKEFFRKVQEMFDKLSGPVVLICGQNKIQSGSKEKKQFTMILPNFGRVGKLPLSLKHLTEGLGATKRLDDDEIHKLFTNVLCIHPPKEEDQLGTFKKQLEEDRKIVISRSSLNELHKVLEEHELSCLDLLHVNTNGVILTKQKAEKVVGWAKNHYLSSCLLPSVKGERLCLPRESLEIAISRLKDQESISRKPSQSLKNLAKDEYESNFVSAVVPPGEIGVKFDDIGALEDVKNALNELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLMAKALANEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLSPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRTKESQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDADNRMKILRIFLAQENLDHDFQFDKLANLTEGYSGSDLKNLCIAAAYRPVQELLEEEKKVAYSVPAPALRPLKLDDFIQSKYKVGPSVAYDAASMNELRKWNEMYGEGGNRTKSPFGFGS 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2084 1101 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 806 982 - -
Dere13g2084 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 806 1028 IPR027417 -
Dere13g2084 1101 Pfam ATPase family associated with various cellular activities (AAA) 848 978 IPR003959 GO:0005524|GO:0016887
Dere13g2084 1101 Gene3D - 807 1083 IPR027417 -
Dere13g2084 1101 Coils Coil 411 431 - -
Dere13g2084 1101 MobiDBLite consensus disorder prediction 416 433 - -
Dere13g2084 1101 MobiDBLite consensus disorder prediction 337 386 - -
Dere13g2084 1101 Pfam AAA+ lid domain 1001 1036 IPR041569 -
Dere13g2084 1101 Gene3D - 980 1065 - -
Dere13g2084 1101 MobiDBLite consensus disorder prediction 337 368 - -
Dere13g2084 1101 SMART AAA_5 844 981 IPR003593 GO:0016887
Dere13g2084 1101 ProSitePatterns AAA-protein family signature. 951 970 IPR003960 GO:0005524|GO:0016887
Dere13g2084 1101 MobiDBLite consensus disorder prediction 416 446 - -
Dere13g2084 1101 MobiDBLite consensus disorder prediction 370 386 - -
Dere13g2084 1101 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 229 1094 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2084 Dere-ChrDere13 28002706 28021044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g2084 807 1039 Calmodulin-binding Proteins AT3G56690 38.983 1.92e-41 163