Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2074 ATGAATTCTGATCAAAGTGAGCTCTATGAGAAAGCAAATTTGGTGTTAGTTGGTTGATATTCAAGTTTGTGCCGAATGGTTCAGAAGTTAGTGAACATGCTGAAGCAGATGGACCCAAAGGACCCATTTCGGGTTGAGATGACCGATATGCTACTAGAAAAGCTGTACAACATTGGTGTGATTCCAACTAGGCAAAGCATCACACTGTGTGAACGTTTAACAGTGTCATCCTTTTGTCGGCGTAGGCTCTCAACTGTTTTGGTGCGATTAAAATTTGCTGAGCACTTGAAAGAAGCTGTCACATACGTTGAGCAGGGTCATATACGAGTTGGTCCGGAGACAATTACTGACCCAGCTTGCCTTGTAACCAGAAATATGGAAGACTTTATTACATGGGTGGACTCGTCAAAGATAAAGAGAAAGGTTCTACAGTACAATGACAAGTTGGATGACTATGACGCAATGAACTGA 471 0.4204 MNSDQSELYEKANLVLVGXYSSLCRMVQKLVNMLKQMDPKDPFRVEMTDMLLEKLYNIGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAEHLKEAVTYVEQGHIRVGPETITDPACLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2074 156 Pfam S4 domain 81 127 IPR002942 GO:0003723
Dere13g2074 156 FunFam U3 small nucleolar ribonucleoprotein IMP3 81 153 - -
Dere13g2074 156 SUPERFAMILY Alpha-L RNA-binding motif 27 148 - -
Dere13g2074 156 ProSiteProfiles S4 RNA-binding domain profile. 81 147 - -
Dere13g2074 156 Gene3D - 81 155 IPR036986 GO:0003723
Dere13g2074 156 Pfam Ribosomal protein S4/S9 N-terminal domain 22 79 IPR001912 GO:0019843
Dere13g2074 156 SMART s4_6 81 144 IPR002942 GO:0003723
Dere13g2074 156 CDD S4 81 149 - -
Dere13g2074 156 PANTHER 30S 40S RIBOSOMAL PROTEIN 20 152 IPR022801 GO:0003735|GO:0015935|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2074 Dere-ChrDere13 27898828 27907882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g2074 9 122 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 28.462 2.37e-09 52.0