Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2070 ATGGCCACTTTCTCTACCTCCCTCTTTCACTTCACCACCTTCATCCTCCTCCTCTCCGCCTCCGCCGTACATGGAAGCGCCGGCGAGGCCGACAGAGTGAGGAACTTGCCGGGGCAGCCTCCGGTGAATTTCAGACACTTCGCCGGCTATGTGAAGCTGAGGCCACAGTCTCAGAAGGCATTGTTCTACTGGTTCTTCGAAGCTCAACACGATCCCTCCCAAATGCCTCTCGTGCTTTGGCTTAATGGAGGACCTGGCTGCTCATCCGTTGCTTATGGAGCTGCACAAGAACTTGGTCCATTTCTTGTTCAAAAGAAAGGGAACCTCTCATTCAACAAATTCTCATGGAACAAAGTTGCAAATATACTGTTCTTGGAGTCACCTGTGGGTGTGGGATTTTCCTACACAAATAACTCAAAAGATTTAGATGAGCTTGGAGATGGAGTCACTGCCATTGATAACTATGCCTTCCTGCTTCAGTGGTTCAAAAAATTCCCAAGCTTTAGATCCCATGACTTTTATATTGCTGGAGAGAGCTATGGTGGACATTATGTTCCACAACTTGCTCAGCTCATCTACGAAGGAAACAAAGATACCAAGAAGGACTCCTACATAAATCTCAAGGGTTTCATGATAGGGAACGGTGTGATAAATGATGCAACAGACACGAAGGGATTGATAGATTATGCTTGGAGCCATGCCATCATCTCAGATCAGTTGTACCATGGAATAGTCCAAGAATGTGACCTCAATGCGGAGAAGCAAACAAGGGAATGTAATATCCAAATCATAAACTTATTAAAAGCTTACTCTGAGATTGACATCTACAGTATTTATTCACCTATCTGCCTCTTCACTTTCAACACCACCACTTCTACACTACTTTCTACCAAACGTGTGGTTGCTCCTCATCTTCTCTCTCTACATGAGCTATGGCATAAGGTACCATCAGGTTATGATCCATGTACAGAGGATTATGTGGCAAAATATTTTAACAGACAAGATGTTCAGGAGGCCCTACATGCCAATATTACCCACTTGTCCTATCCTTATACCCTTTGCAGTTCTGTGATTGAAAAATGGAATGACTCAGCAAGCACCGTTCTGCCTATCATTCAGAAACTCTTACACGCTGGTCTACGCATTTGGATTTACAGCGGGGACACAGATGGGAGGGTTCCAGTGACATCATCAAGGTACAGCATAGAGAAGATGGGCTTGAAGATAGAGGAAAGCTGGAGAGCTTGGTATCACGACCATCAAGTGGGAGGGTGGAAGCAAGTGTATGAAGGTGGCCTCACTTTTGTGACCATAAGAGGTGCTGGCCACCAAGTTCCGTTTTACAAGCCTCAACAATCCCTCTCTCTTTTCTCTCATTTTCTCTCTGCTCAACCCCTTCCCTCTTCTCGCTTCTAG 1416 0.4541 MATFSTSLFHFTTFILLLSASAVHGSAGEADRVRNLPGQPPVNFRHFAGYVKLRPQSQKALFYWFFEAQHDPSQMPLVLWLNGGPGCSSVAYGAAQELGPFLVQKKGNLSFNKFSWNKVANILFLESPVGVGFSYTNNSKDLDELGDGVTAIDNYAFLLQWFKKFPSFRSHDFYIAGESYGGHYVPQLAQLIYEGNKDTKKDSYINLKGFMIGNGVINDATDTKGLIDYAWSHAIISDQLYHGIVQECDLNAEKQTRECNIQIINLLKAYSEIDIYSIYSPICLFTFNTTTSTLLSTKRVVAPHLLSLHELWHKVPSGYDPCTEDYVAKYFNRQDVQEALHANITHLSYPYTLCSSVIEKWNDSASTVLPIIQKLLHAGLRIWIYSGDTDGRVPVTSSRYSIEKMGLKIEESWRAWYHDHQVGGWKQVYEGGLTFVTIRGAGHQVPFYKPQQSLSLFSHFLSAQPLPSSRF 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2070 471 Gene3D - 368 462 - -
Dere13g2070 471 Pfam Serine carboxypeptidase 37 462 IPR001563 GO:0004185|GO:0006508
Dere13g2070 471 SUPERFAMILY alpha/beta-Hydrolases 27 468 IPR029058 -
Dere13g2070 471 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 450 IPR001563 GO:0004185|GO:0006508
Dere13g2070 471 FunFam Carboxypeptidase 368 463 - -
Dere13g2070 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Dere13g2070 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Dere13g2070 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185|GO:0006508
Dere13g2070 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Dere13g2070 471 FunFam Carboxypeptidase 27 285 - -
Dere13g2070 471 FunFam Carboxypeptidase 318 466 - -
Dere13g2070 471 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Dere13g2070 471 Gene3D - 322 359 - -
Dere13g2070 471 ProSitePatterns Serine carboxypeptidases, histidine active site. 433 450 IPR033124 GO:0004185
Dere13g2070 471 Gene3D alpha/beta hydrolase 27 285 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2070 Dere-ChrDere13 27858159 27864443 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g2070 327 466 Calmodulin-binding Proteins AT2G22960 32.624 2.58e-16 75.1