Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2059 ATGGCGCGTGGAAGGAAGCGGCAGAAGAAGAAAGAGGTGGTTCCACCGCAGCAGCAGCAGCAGCAGCAGTGTGAGAAGCGAGACGGTGAAGAAGAAGAAAAACCAATATTTATGGATGAGAGCCTCAAGAATCAGCCTTCGGTGGAAGGCGGTAGTGGAGTAGAAATAAGGGAACGATCAGAAAGTTTCGATTTTGACGCCCAACAAGCGAAGGTCGACCCATTCCATAAAACCGAAGGAACAGAAGTTGTAAAGAAGAAGCGCGGCAGAAAGAGTAAGGCAGAGAAGGAGGCGCTAAAAAACGAGGCTTTGGTGAATGAGACGAAGGCGGATGGTGTTACTTCACATTGTGCTGTAAACCATCATGGTAACAACATTGTAGAAGGTGATGAAGCAGGTGTGTTGTTTTCTATTTCGAAGCGTGGTAGAAGAATAACGCAGAAACTGGTCGATTTAGGTAGCTTTGAATATGAAGATGATGATGATGTGAAAGGAGCATCTATGAAAAGGCGCGGTAGGAGAGGTCGTAAAAAGGCGAAAGTTGCTTCTGATAAAATATCTATGGCTGAGGAAGGTGTAGATAAAGGTGATTTAGTTGGGAAGGAGGACTTAGTATATCTGAAGCAAAGTGATCCTGGAGATTCTGTGGAGGATTGCAGCGGCAGAGGATTAGATGATGAAGTGAGGATTAGGAAGGGAAAAAGACAACGGGGGGAGAGGGGCAACATTCAAGATGGATTGGTAGAATGTGGTCTGGAAGAAATGGTAAGTGAAGATAAGAAAAGTTCAAGCCGTGGGAAGGCGGCTAGTAATGCTAAGGCAGAAGATGAAGTTTTGGAGGCTCATGGTACAACTGAAATGACTAGAGATTCTTCAGAAAGCAAATCCTGTAAAGGTTATAGTTTGAGGGCTTCAAAATCTGAAGTTAATACACAGGAGAAGCCCAAAGTTAACAAGCACGATCCTGAATGGATTGAAAAAGTGTCCTTAATGTGCCATCAATGTCAGAGAAATGATAAAGGCAGGGTTGTTAGGTGTGCAAATTGTAAGCGGAAACGATTTTGCATCCCCTGTTTAGAGCGTTGGTATCCTCAATTGAGAGAGGAAGATATTGTCCAGGCATGTCCTGTGTGCTGTGAAAACTGCAATTGCAAAGCATGTTTGCGCTCTGACGAATTAGTTAAAAAAATGAAGAAAGGAGTAAAAATCAATAAAAATGGGGAAGTTGAACACTGTAAGTACTTGCTACAAGCACTTTTGCCATATGTAAGACAGCTATGTGAAGAGCAAATGATCGAGAAGGAGATAGAAGCTAAGAGACAAGGCCTCTCAATTTCAGAGCTTCAGGTAGAACGGGCAGATTGCACTGATGACGAGCGAGTCTACTGTGACAACTGTAGAACTTCAATTTTTGATTGTCATCGAAGCTGTAAAGAATGTTCTTTTGACCTCTGTCTGGCCTGTTGCCGTGAGATTCGTCAGGGGCAGCTTCTTGGAGGTGCAGAGCCAGTTGACTTTGAATTTATCAGCCCGGGTTTCGAATATATGCATGGTGGAGATGAACAAATAACTGAATTACATGTTGAGACAAAGACTGAGGATCATAACTGGTCAAGATCTGATTTGAAGGTGACAAGTGATGGTAACATCCCTTGTCCAAGGGTGGATAGAGGTTGTGGTCATACTAATCTTGAACTGCGATGCATACTTCCTGATGATTGGATTTTGGAATTAGTAACGAAAGCAGAAAATATAGCTAAAGCGTATAAGCTTGACGATGTAGTAGAGACAAGTAAGCAGTGGTGTTCATGTTTTAACCTAGATAGTAACAACAATGACGTTTTTGGAAATAAGAATCGGAGGAGGGCAGCTTCTCGTGAAGATCCTACTGACACTGACAACTATTTATACTGTCCAAGAGCCATAGATGTAGGACCTGTGGATCTGAAGCACTTTCAGTGGCACTGGAGTAAAGGAGAGCCAGTGATTGTCAGCAATGTGCTTGAATGTACAACTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCTTTCCGTCAGATAACTAAAACCAAGCAAAGCCAGCATTTGGCAGTGAAGGTTATTGATTGCTTGGATTGGTGTGAGGACGACATCAATATCCACCAATTCTTTACTGGGTACTCAGAAGGTCGATATGATAAGAAGTCATGGCCACAGATATTGAAACTGAAAGACTGGCCTCCGTCTAATTTATTTGAGGAGCGTTTACCACGCCATTGTGCTGAGTTCATTGCTTCCTTGCCCTATAAGGAATATACAGATCCTCATAATGGTGTTTTAAACCTGGCTTCAATGTTGCCAGAGAACTGTATAAAGCCAGATATTGGGCCAAAGACATACATTGCTTATGGAATTGCTCAGGAGCTTGGACGTGGCGATTCAGTGACAAAGCTTCATTGTGATATGTCTGATGCAGTGAACGTATTAACACATACTTTTGAAGTGCCCCTTGATGCTGGCAAACTTGCATCAATAGAGGAATTAAAACCAAAGCACCTTGAGCAAGACAGAAGGGAGCAGCTATATGGCAGTAGTCAGGGGGTGGAAGCTAATGTTGAGAATGGCAAAACTACTGATTTTGGAAATACATCATTTGTTGATGATTCTGTTGAGGGAGGTGCTCTCTGGGATATTTTTAGGAGACAGGATGTCCCTAAACTGGAGAAATACCTTAAGAAGCACTTCAGAGAATTCAGGCATGTCCACTGCCGTCCATTACAGCAGGTTATTCATCCTATCCATGATCAGACCTTTTATTTGACTATGGAGCATAAGAGGAAGCTAAAGGAGGAATATGGAATTGAACCATGGACATTCATTCAGAAACTTGGGGATGCAGTTTTGATTCCAGCTGGTTGTCCCCACCAAGTCAGAAATCTGAAGTCATGTATCAAGGTTGCCCTTGATTTTGTCTCACCTGAAAGTATAGATGAGTGTTTCCGTTTGACAAAGGAATTCCGCATGCTTCCCATAAATCACAGGGCCACAGAGGACAAATTGGAGGTATAA 3051 0.4287 MARGRKRQKKKEVVPPQQQQQQQCEKRDGEEEEKPIFMDESLKNQPSVEGGSGVEIRERSESFDFDAQQAKVDPFHKTEGTEVVKKKRGRKSKAEKEALKNEALVNETKADGVTSHCAVNHHGNNIVEGDEAGVLFSISKRGRRITQKLVDLGSFEYEDDDDVKGASMKRRGRRGRKKAKVASDKISMAEEGVDKGDLVGKEDLVYLKQSDPGDSVEDCSGRGLDDEVRIRKGKRQRGERGNIQDGLVECGLEEMVSEDKKSSSRGKAASNAKAEDEVLEAHGTTEMTRDSSESKSCKGYSLRASKSEVNTQEKPKVNKHDPEWIEKVSLMCHQCQRNDKGRVVRCANCKRKRFCIPCLERWYPQLREEDIVQACPVCCENCNCKACLRSDELVKKMKKGVKINKNGEVEHCKYLLQALLPYVRQLCEEQMIEKEIEAKRQGLSISELQVERADCTDDERVYCDNCRTSIFDCHRSCKECSFDLCLACCREIRQGQLLGGAEPVDFEFISPGFEYMHGGDEQITELHVETKTEDHNWSRSDLKVTSDGNIPCPRVDRGCGHTNLELRCILPDDWILELVTKAENIAKAYKLDDVVETSKQWCSCFNLDSNNNDVFGNKNRRRAASREDPTDTDNYLYCPRAIDVGPVDLKHFQWHWSKGEPVIVSNVLECTTGLSWEPLVMWRAFRQITKTKQSQHLAVKVIDCLDWCEDDINIHQFFTGYSEGRYDKKSWPQILKLKDWPPSNLFEERLPRHCAEFIASLPYKEYTDPHNGVLNLASMLPENCIKPDIGPKTYIAYGIAQELGRGDSVTKLHCDMSDAVNVLTHTFEVPLDAGKLASIEELKPKHLEQDRREQLYGSSQGVEANVENGKTTDFGNTSFVDDSVEGGALWDIFRRQDVPKLEKYLKKHFREFRHVHCRPLQQVIHPIHDQTFYLTMEHKRKLKEEYGIEPWTFIQKLGDAVLIPAGCPHQVRNLKSCIKVALDFVSPESIDECFRLTKEFRMLPINHRATEDKLEV 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2059 1016 Pfam JmjC domain, hydroxylase 886 984 IPR003347 -
Dere13g2059 1016 MobiDBLite consensus disorder prediction 24 39 - -
Dere13g2059 1016 FunFam Transcription factor jumonji domain-containing protein 633 1010 - -
Dere13g2059 1016 MobiDBLite consensus disorder prediction 255 300 - -
Dere13g2059 1016 MobiDBLite consensus disorder prediction 1 97 - -
Dere13g2059 1016 MobiDBLite consensus disorder prediction 54 97 - -
Dere13g2059 1016 Gene3D Cupin 642 1010 - -
Dere13g2059 1016 SUPERFAMILY Clavaminate synthase-like 646 1014 - -
Dere13g2059 1016 ProSiteProfiles Zinc finger RING-type profile. 332 378 IPR001841 -
Dere13g2059 1016 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 1016 IPR045109 GO:0032454|GO:0033169
Dere13g2059 1016 MobiDBLite consensus disorder prediction 255 293 - -
Dere13g2059 1016 SMART cupin_9 750 1001 IPR003347 -
Dere13g2059 1016 ProSiteProfiles JmjC domain profile. 769 1001 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2059 Dere-ChrDere13 27730594 27740225 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere13g2059 JmjC 2.6e-14 CL0029