Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2055 ATGGAGAATAACACCGCCAACAACGCCAAAGCAGTTTCTGGAGGAGCCAAACCCGTCAATGACAACGAAGAGCGTTCGAATTTGAACGAAGAGGAACACAGAGAAGAACAAGTGGATGTAGATGTGGATGAAAATGGAGTTGAAGATGAAGATGGAGGAGAAAGAACTGGATCTGGCTCTACCCGGTCTCCTCATCGCCACCCTTCCAGAACCCCTTTCACCAATCTCAGTCAGGTCGATGCTGACCTCGCCCTTGCTCGAACCCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAACAATGAAGGAAGTGATTATGGTAGTTGGGAAGCTGGAAGCTATTTTCATGATGATGGGGATGATTTTGAAGATCTACATGATGGTACTGATGTAGATGATGATGATGACAATGGCCCTAATGATGACGAGGAAGAGGAGGAGGAGGAGGAGGATGATAATGATGAAGAATATGAGAATGAAGATGCATTTGATGCCCATGCTCATGCTAGTTCTGGGGAAATTGATAATACAAGCATTGAATTTGACCCAGATGTATTTTCAAGTGATGAAGCCTATGCTAGAGCATTACAAGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGTTAGCTTTGGCTGGCATTAATGATCGGGAAGCTGAGGACACAGAGGACCATGGTGCTAATTCTCAGGATGCATGGGAGGATGTTGATCCTGATGAACTTTCGTATGAGGAACTATTAGCATTGGGTGAAGTTGTTGGAACTGAGAGCAGAGGTCTTTCCCCAGATATTATTGCCTCTTTGCCTTCAGTCAACTACAAGATGGAAAGTGATCAACATGGAAGTAATGATTCGTGTGTCATATGCCGGGTGGATTATGAGGATGGTGAATCCTTGACTGTTCTTTCATGCAAACATTTGTACCACCCTGAGTGCATTAATAATTGGTTAAAAATAAACAAGGTTTGCCCTGTCTGCAGTGCTGAAGTATCAGCTTCTGGGAGCAGCTTGTAG 1020 0.4451 MENNTANNAKAVSGGAKPVNDNEERSNLNEEEHREEQVDVDVDENGVEDEDGGERTGSGSTRSPHRHPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEAGSYFHDDGDDFEDLHDGTDVDDDDDNGPNDDEEEEEEEEDDNDEEYENEDAFDAHAHASSGEIDNTSIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDREAEDTEDHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSPDIIASLPSVNYKMESDQHGSNDSCVICRVDYEDGESLTVLSCKHLYHPECINNWLKINKVCPVCSAEVSASGSSL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2055 339 MobiDBLite consensus disorder prediction 218 239 - -
Dere13g2055 339 MobiDBLite consensus disorder prediction 218 234 - -
Dere13g2055 339 MobiDBLite consensus disorder prediction 57 78 - -
Dere13g2055 339 MobiDBLite consensus disorder prediction 104 164 - -
Dere13g2055 339 Pfam Ring finger domain 286 328 IPR001841 -
Dere13g2055 339 SUPERFAMILY RING/U-box 275 333 - -
Dere13g2055 339 ProSiteProfiles Zinc finger RING-type profile. 288 329 IPR001841 -
Dere13g2055 339 MobiDBLite consensus disorder prediction 1 78 - -
Dere13g2055 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 335 IPR013083 -
Dere13g2055 339 SMART ring_2 288 328 IPR001841 -
Dere13g2055 339 Coils Coil 142 162 - -
Dere13g2055 339 FunFam E3 ubiquitin ligase BIG BROTHER-related 254 335 - -
Dere13g2055 339 MobiDBLite consensus disorder prediction 36 50 - -
Dere13g2055 339 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 24 337 IPR043312 -
Dere13g2055 339 MobiDBLite consensus disorder prediction 125 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2055 Dere-ChrDere13 27710444 27717025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g2055 59 232 C3H Transcription Factor Family AT3G19910 46.857 5.84e-37 131