Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2047 ATGTCTAAGACATCTGGGCTGCTGCCTGCCTTCCAGTCTCTCAAATCATTGCCTCCTAAGTTCAAGTTTACAGGCGATCCAACACTTGATCTTCTGGAAAAATATGAAAATGTTACATTGGTAAGCACGAATGTGATTGTATCAAGTGGTCCTGAAAGTGCTTTAGGAAGGGAGGTTTCTGAGGAAGTTCAAGACTGTGCTGGTGACATGGATCTTTTCGATGAGGATTCGCCATATAGTGAAGTAACTACATCATTAGAAAGCAGGCCCTCAATCGACGATGGAGGCATAGATGTTCCTCTACCACTCCCATCAATTTCATCATCCTCCGGGGAACACAGGTGGAGTGATACAACACCTTATGCTTCGAAGAAGAAAATTCAATCTTGGTTTCAACTTCCCAATGGGAATTGGGAGCTGGGGAAGATAATATCAACTTCTGCAACTGAATCGGTTATTTCACTGCCTGATGGGAAGGTTTTAAAGGTTAAAGCTGAAAGTTTGGTACCAGCAAATCCTGATATTCTTGATGGAGTGGATGACCTTATGCAACTTAGTTATTTAAATGAACCATCAGTTTTATACAATCTGCAATACAGATACAATCAGCATATGATTTATACAAAAGCAGGGCCTGTTTTGGTTGCAGTAAACCCTTTTAAGAAAGTCCCTCTATATGGAAATGATTATATTGAAGCATACAAGCGTAAAGCAATTGAAAGCCCTCATGTATATGCCATTACAGACACAGCCATCAGGGAAATGACACGAGATGAAGTAAATCAATCTATAATTATAAGTGGTGAAAGTGGAGCTGGGAAGACTGAGACAGCAAAGATAGCAATGCAGTACTTGGCTGCCCTTGGAGGTGGAAGTGGAATAGAGTATGAGATATTAAAGACTAATCCAATACTAGAAGCCTTTGGTAATGCAAAAACATTGAGAAATGACAACTCAAGTCGATTTGGAAAACTTATTGAGATTCACTTCAGTGAAACTGGAAAAATATCGGGTGCTAATATTCAAACATGTAAGTTTACTCCTGAATTTGTGGTTAAAACCGTATTTTTGATTCCATTTGAATCTAGAGTAGTCCAATGCAATGAAGGGGAAAGGTCATATCATATTTTCTATCAGCTGTGTGCTGGGGCACCACCTTCTCTGAGGGGAACAGGATTTATTATTGCTATTAGAGAGAAGCTAAATCTGCAAAGCGCGGAAGACTACAAATATCTGAGGCAGAGCAATTGTTTTTCAATTACCGGCGTTAATGATGCAGAAGAATTTCGCATAGTCATGGAAGCTCTGGATGTTGTCCACATCAGCAAAGAAGACCAGGACAATGTATTTGCAATGCTTGCAGCAGTATTATGGCTAGGGAACATATCGTTTATTGTGATTGATAATGAGAATCATGTTCAAGCCGTAGAAGATGAGGGTTTGTTCAACGTTGCTAAATTGATTGGCTGTGACATTGGTGATCTGAAGTTGACTCTATCAACTCGAAAAATGAAAGTTGGTAATGATAATATTGTCCAAAAGTTGACGCTATCACAGGCAATTGATGCGAGAGATGCTTTGGCAAAGTCAATATATGCATGTCTATTTGATTGGCTAGTTGAACAAATTAACAATTCACTTGCTGTTGGCAAAAGACGTACTGGCAGATCAATCAGTATTTTGGACATCTATGGATTTGAGTCATTTGAGAGGAACAGTTTTGAGCAATTCTGCATAAATTATGCAAATGAGAGATTGCAGCAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATCTACAAGATGGCATTGACTGGGCTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAGAAGAAACCGCTGGGGTTACTATCCCTGTTAGATGAGGAGTCCACTTTCCCAAATGGTACAGATTTGACATTTGCAAACAAGCTTAAGCAACATTTGAATTCAAATTCATGTTTCCGTGGAGAACGTGGCAAAGCCTTTGCTGTGTGTCACTATGCAGGGGAGGTCACCTATGATACAACTGGGTTTCTGGAGAAGAACAGGGACCTATTGCACTTGGATTCCATTCAACTTCTATCCTCATGCACGTGTCATCTTCCTCAGATATTTGCAGCCCATATGCTTTTGCAGTCTGAGAAGCCTGTAGTTGGTCCCTTACACAAGTCAGGTGGAGCAGATTCCCAAAAGCTAAGTGTTGCCACAAAATTCAAGGTTCAGTTATTCCAACTGATGCAACGTTTAGAGAGCACCACACCACATTTCATTCGATGCATTAAGCCCAATAAGTTCCAGTCACCGGGATTATATGAGCAAGGGCTTGTACTTCAGCAACTGAGATGTTGTGGGGTCCTGGAAGTGGTTCGAATATCAAGATCAGGCTTTCCTACTAGAATGTCTCACCAAAAGTTTGCCAGAAGATATGGTTTTCTTCTCCTTGAAGATGTTGCATCTCAGGATCCACTTAGTGTTTCAGTTGCAATCCTGCATCAGTTTAATATTTTGCCTGAGATGTATCAAGTTGGCTACACCAAATTATTTTTCCGAACAGGACAGATTGGAGTGCTTGAAGATGCTAGAAATCGCACCCTCCATGGCATTTTACGTGTACAAAGTTGCTTCAGAGGTCACCAAGCACGTCGCTTTCACAGGGAGCTTAAGAGAGGAATCACTACTCTCCAGTCATTTGTTAGGGGACAGAAAACAAGAAAGGAATATGCAGCCTCACTTCAAAGACATAGAGCTGCTGTTCTCATACAGAAGCAAATGAAAGCAGTATTTGCAAGAAACAGAATGAAGAATATTTATGATGCTACAATAGTCATACAATCAGCTATTCGTGGTTGGTTGGTCAGAAGATGCTCAGGTGATATAGGATTATTGAAATCTGCAGGCGTGAAGACCGACGAGTCAGAGGAGGTGCTTGTCAAGGCTTCTTTCCTGGCTGAATTACAACGCCGGGCACTCAAGGCTGAAGCTGCGTTTAGAGAGAAAAAAGAGGAAAATGACATCCTCCACCAGCGTCTCCAACAGTACGAGAGCCGTTGGTCTGAGTATGAATTGAAGATGAAATCAATGGAAGAAGGGTGGCAGAAACAAATGAGATCCCTTCAATCTAGCCTCTCCATTGCGAAAAAGAGTTTTGCAATTGATGATTCTGCTAGAAATTCGGATGCATCTGTCAATGCAAGTGATGACAGAGACTACAGCTCAGATATGGGAAGCAATCATAGGCGCCAAGAAAGCAGCTCGAGTATAGGAAACAATCATAGGCGCCAAGAAAGCAATGGGTTTAGATCAATGAGTGCAGGTTTGAATGTTATAAGTGGGTTGTCTCAAGAATTGGAGCAGAGGCGTCAAGTATTTGGCGATGATGCCAAGTTCTTGGTTGAGGTGAAATCTGGTCAAGTTGAAGCAAGTTTGAATCCAGACCAGGAGCTTAGAAGGTTGAAACACACGTTTGAAGCTTGGAAAAAGGATTATGGGGCAAGATTACGTGAAACAAAGGCCATTTTACACAAGCTTGGTACTGAAGAAGGTGCAATTGACAGGGTGAAGAAAAGGTGGTGGGGAAGAAGGAACAGTACGAGGATAAATTGA 3630 0.4116 MSKTSGLLPAFQSLKSLPPKFKFTGDPTLDLLEKYENVTLVSTNVIVSSGPESALGREVSEEVQDCAGDMDLFDEDSPYSEVTTSLESRPSIDDGGIDVPLPLPSISSSSGEHRWSDTTPYASKKKIQSWFQLPNGNWELGKIISTSATESVISLPDGKVLKVKAESLVPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNQHMIYTKAGPVLVAVNPFKKVPLYGNDYIEAYKRKAIESPHVYAITDTAIREMTRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTCKFTPEFVVKTVFLIPFESRVVQCNEGERSYHIFYQLCAGAPPSLRGTGFIIAIREKLNLQSAEDYKYLRQSNCFSITGVNDAEEFRIVMEALDVVHISKEDQDNVFAMLAAVLWLGNISFIVIDNENHVQAVEDEGLFNVAKLIGCDIGDLKLTLSTRKMKVGNDNIVQKLTLSQAIDARDALAKSIYACLFDWLVEQINNSLAVGKRRTGRSISILDIYGFESFERNSFEQFCINYANERLQQHFNRHLFKLEQEEYLQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFRGERGKAFAVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCTCHLPQIFAAHMLLQSEKPVVGPLHKSGGADSQKLSVATKFKVQLFQLMQRLESTTPHFIRCIKPNKFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLEDVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDARNRTLHGILRVQSCFRGHQARRFHRELKRGITTLQSFVRGQKTRKEYAASLQRHRAAVLIQKQMKAVFARNRMKNIYDATIVIQSAIRGWLVRRCSGDIGLLKSAGVKTDESEEVLVKASFLAELQRRALKAEAAFREKKEENDILHQRLQQYESRWSEYELKMKSMEEGWQKQMRSLQSSLSIAKKSFAIDDSARNSDASVNASDDRDYSSDMGSNHRRQESSSSIGNNHRRQESNGFRSMSAGLNVISGLSQELEQRRQVFGDDAKFLVEVKSGQVEASLNPDQELRRLKHTFEAWKKDYGARLRETKAILHKLGTEEGAIDRVKKRWWGRRNSTRIN 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2047 1209 SMART MYSc_2a 171 872 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere13g2047 1209 CDD MYSc_Myo8 191 859 IPR036022 -
Dere13g2047 1209 SMART iq_5 872 894 IPR000048 GO:0005515
Dere13g2047 1209 SMART iq_5 921 943 IPR000048 GO:0005515
Dere13g2047 1209 SMART iq_5 944 966 IPR000048 GO:0005515
Dere13g2047 1209 SMART iq_5 895 917 IPR000048 GO:0005515
Dere13g2047 1209 FunFam Unconventional myosin-XIX 569 761 - -
Dere13g2047 1209 ProSiteProfiles IQ motif profile. 875 902 IPR000048 GO:0005515
Dere13g2047 1209 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 124 173 IPR004009 GO:0003774|GO:0005524|GO:0016459
Dere13g2047 1209 Coils Coil 991 1025 - -
Dere13g2047 1209 PANTHER MYOSIN 170 1202 - -
Dere13g2047 1209 MobiDBLite consensus disorder prediction 70 98 - -
Dere13g2047 1209 Gene3D - 805 872 - -
Dere13g2047 1209 Pfam Myosin head (motor domain) 179 859 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere13g2047 1209 ProSiteProfiles IQ motif profile. 896 925 IPR000048 GO:0005515
Dere13g2047 1209 Gene3D - 569 761 - -
Dere13g2047 1209 FunFam Myosin heavy chain 372 437 - -
Dere13g2047 1209 Gene3D - 372 437 - -
Dere13g2047 1209 Gene3D Kinesin motor domain 176 804 IPR036961 -
Dere13g2047 1209 Gene3D Myosin VI head, motor domain, U50 subdomain 438 546 - -
Dere13g2047 1209 MobiDBLite consensus disorder prediction 1086 1109 - -
Dere13g2047 1209 ProSiteProfiles Myosin motor domain profile. 177 871 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere13g2047 1209 PRINTS Myosin heavy chain signature 557 585 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere13g2047 1209 PRINTS Myosin heavy chain signature 207 226 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere13g2047 1209 PRINTS Myosin heavy chain signature 261 286 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere13g2047 1209 PRINTS Myosin heavy chain signature 610 638 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere13g2047 1209 PRINTS Myosin heavy chain signature 303 330 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere13g2047 1209 ProSiteProfiles IQ motif profile. 947 974 IPR000048 GO:0005515
Dere13g2047 1209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 917 IPR027417 -
Dere13g2047 1209 Gene3D - 923 965 - -
Dere13g2047 1209 Gene3D - 875 922 - -
Dere13g2047 1209 MobiDBLite consensus disorder prediction 1064 1109 - -
Dere13g2047 1209 MobiDBLite consensus disorder prediction 1064 1079 - -
Dere13g2047 1209 Pfam IQ calmodulin-binding motif 898 916 IPR000048 GO:0005515
Dere13g2047 1209 Pfam IQ calmodulin-binding motif 947 963 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2047 Dere-ChrDere13 27598115 27613883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g2047 10 1207 Myosins gene family AT1G50360 73.667 0.0 1771