Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2044 ATGGCCGAGACACCGTCTCCGCCGCCGGAGCAACCCTTGCCGGAAGCCGATGCTCTGGAGTACTGGTGCTACCACTGCGACAAGCGTGTATCCATCGAAACACAGCCTGATCTCCCTGACATTCTCTGCCGCGAGTGCAAGCATGGCTTTGTCGAATCCATTCCTTCACCGTCTTTAGCTCCGCCTTCTGCGACCTCTGATCTGATCGACGATCCTCAGTTTGGATCGCAATTTCTGCGTGTGCTTCGGCTACTTGCGGAGTCGGCGCGTGATGAAGACGCTCCTCCTCCTCCGTCTCGGAACCTCTCCGCGAGCGATGATTTTCTAAGGATTGAGCTCGATGAGTGGGATGACGATGAAGAAAGCAGCAACAACAACAACGACGAGGATGACGAAGATGATGGGGTGGAGTTCCATGAGGAAGGAGAAGAAGAGCACGAAGGTAACGAAGAGCATGAAGATCGGCTGGGAGACGAGGACCCGAGTGGAGACGAAACAGAAGGAGATCTACGAAGGAGGAGCATGCGGAACCGGATCAGAGACTTGACAAGTCGGATCAGAGATTTGGCAACTGGCACGAGGAGCAGGAGGAACCGGATCTTGGATTGGGCTGATATACTGATGGGTCTGGAAGACAATTCAATAGAACTCAGACTTCAAGTGCCGGATTCGGATCGGTTTTTCGGGAACCCGGGAGATTACGTCGATGCCGCTGATTATGAAGCTTTGCTCTTGACCATGGCGGAAAGTGATGGAAGCGGGAGGAGAGGAGCCCCACCGGCGGCAAAATCCGCGGTGGAGTCACTGCCAACGGTGGAGATTGCGTCGGAGGATCAAACTTTGGTGTGCGCTATTTGCAAGGATATGGTGGGTGTGGGAAACATGGCAAAGCGATTGCCCTGTGGGCATCAGTACCATGGCGATTGCATAGTGCCCTGGTTGGGTTCTAGAAATTCATGCCCAGTGTGCAGGTTTGAGCTTTCAACGGATGACCAGGAATACGAGGAAGAAAAGAAGAAGAGGCTGACTACCAGTACTGCTAATGGGGCTTCGGGTTCGGGTGGAACTGATACTGTATCGGGTTGA 1086 0.5368 MAETPSPPPEQPLPEADALEYWCYHCDKRVSIETQPDLPDILCRECKHGFVESIPSPSLAPPSATSDLIDDPQFGSQFLRVLRLLAESARDEDAPPPPSRNLSASDDFLRIELDEWDDDEESSNNNNDEDDEDDGVEFHEEGEEEHEGNEEHEDRLGDEDPSGDETEGDLRRRSMRNRIRDLTSRIRDLATGTRSRRNRILDWADILMGLEDNSIELRLQVPDSDRFFGNPGDYVDAADYEALLLTMAESDGSGRRGAPPAAKSAVESLPTVEIASEDQTLVCAICKDMVGVGNMAKRLPCGHQYHGDCIVPWLGSRNSCPVCRFELSTDDQEYEEEKKKRLTTSTANGASGSGGTDTVSG 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2044 361 MobiDBLite consensus disorder prediction 344 361 - -
Dere13g2044 361 SUPERFAMILY RING/U-box 278 330 - -
Dere13g2044 361 ProSiteProfiles Zinc finger RING-type profile. 283 324 IPR001841 -
Dere13g2044 361 MobiDBLite consensus disorder prediction 115 148 - -
Dere13g2044 361 MobiDBLite consensus disorder prediction 115 175 - -
Dere13g2044 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 330 IPR013083 -
Dere13g2044 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 124 327 - -
Dere13g2044 361 FunFam E3 ubiquitin-protein ligase RING1-like 246 330 - -
Dere13g2044 361 Pfam Ring finger domain 283 324 IPR001841 -
Dere13g2044 361 MobiDBLite consensus disorder prediction 336 361 - -
Dere13g2044 361 Pfam zinc-ribbon 21 54 IPR039525 GO:0061630
Dere13g2044 361 SMART ring_2 283 323 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2044 Dere-ChrDere13 27577140 27578225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g2044 146 342 C3H Transcription Factor Family AT5G01980 41.463 4.58e-36 135