Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2028 ATGACGGCAGATGAAGTGGGTATTAGCTCTGTGTGGAGCAGAGAGCAGGATAAAGCATTTGAAAATGCTCTAGCAACTCATCCTGAAGATGCTTCAGATCGGTGGGAGAAGATTGCAGCTGATGTACCTGGGAAAACTGTAGAAGAGATTAAACTTCACTACGACCTATTGGTGGATGATCTTAACCAGATCGAATCTGGTTGTGTGCCTATACCATCTTATAATTCTTCTTCAGAGGGTTCAACCAGCCATGCTAGTGATGAAGGAGTTGGCAAGAAGGGTTCTGGGCATTATAACAGTGAGTCTAATCATGGAACTAAGGCTTCAAGATCAGATCAGGAACGACGAAAGGGTATTGCTTGGACAGAAGATGAACACAGGTTATTTCTTCTTGGCTTGGAGAAGTATGGGAAAGGTGACTGGCGAAGCATATCCAGGCACTATGTCGTGACAAGAACGCCTACTCAAGTAGCAAGCCATGCTCAAAAATACTTCATTCGTTTGAACTCGATGAATAAAGATAGAAGAAGATCCAGCATACATGATATCACCAGCGTGAACAATGGAGACATTTCAGCACCTCAAGGGCCTATCACTGGTCAAACGAACGGTTCTTCTGCATCCAATTCTACTGGCAAATCAGCCAAACAAACCCCTCAAACTCCAGCGGGTCCTCCCGGTGTTGGAATATATGGTGCTCCAACTATTGGGCAACCTATAGGAGGACCCCTTGTATCTGCAGTGGGCACCCCAGTAAATCTTCCTTCCCCAGCACACATGGCGTATGGCGTCCGAGCACCGGTTCCCGGCACAGTCGTTCCTGGTGCGCCAATGAGCATGGGTCCTATGCCGTACACTATGCCACACACATCTGCTCATAGGTGA 885 0.4712 MTADEVGISSVWSREQDKAFENALATHPEDASDRWEKIAADVPGKTVEEIKLHYDLLVDDLNQIESGCVPIPSYNSSSEGSTSHASDEGVGKKGSGHYNSESNHGTKASRSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRHYVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISAPQGPITGQTNGSSASNSTGKSAKQTPQTPAGPPGVGIYGAPTIGQPIGGPLVSAVGTPVNLPSPAHMAYGVRAPVPGTVVPGAPMSMGPMPYTMPHTSAHR 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2028 294 MobiDBLite consensus disorder prediction 72 117 - -
Dere13g2028 294 Pfam Myb-like DNA-binding domain 11 54 IPR001005 -
Dere13g2028 294 Pfam Myb-like DNA-binding domain 120 165 IPR001005 -
Dere13g2028 294 MobiDBLite consensus disorder prediction 175 234 - -
Dere13g2028 294 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Dere13g2028 294 SMART sant 8 60 IPR001005 -
Dere13g2028 294 SMART sant 117 167 IPR001005 -
Dere13g2028 294 FunFam transcription factor MYB1R1 119 170 - -
Dere13g2028 294 PANTHER TRANSCRIPTION FACTOR KUA1 10 289 - -
Dere13g2028 294 Gene3D - 10 57 - -
Dere13g2028 294 SUPERFAMILY Homeodomain-like 115 170 IPR009057 -
Dere13g2028 294 ProSiteProfiles SANT domain profile. 7 54 IPR017884 -
Dere13g2028 294 MobiDBLite consensus disorder prediction 182 221 - -
Dere13g2028 294 ProSiteProfiles Myb-like domain profile. 12 58 IPR001005 -
Dere13g2028 294 ProSiteProfiles Myb-like domain profile. 113 165 IPR001005 -
Dere13g2028 294 ProSiteProfiles SANT domain profile. 121 169 IPR017884 -
Dere13g2028 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 169 IPR017930 -
Dere13g2028 294 CDD SANT 120 165 IPR001005 -
Dere13g2028 294 FunFam Transcription factor SRM1 4 71 - -
Dere13g2028 294 NCBIfam myb-like DNA-binding domain, SHAQKYF class 117 167 IPR006447 GO:0003677
Dere13g2028 294 Gene3D - 119 171 - -
Dere13g2028 294 CDD SANT 12 54 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2028 Dere-ChrDere13 27436947 27444513 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere13g2028 Myb_DNA-binding 5.8e-12 CL0123