Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2015 ATGGCTCAGCTGGAGTGTATATATATTAGTTCATCGGATGATGACCTGGAGCTGGAGGAGATAGAAAATCCAAATTATAAAAACCCTCCAGAATGGTCTGCTCGTGGAAGTAATGCTGGTTATAATGGAGGGTTTACGCTGGATAGAACTTTTAAACAGGCAAATGCTTTGAAAGCAAGCTCTTCTAGTGCTTATACTTCTTCACAAGCCGAGCAAGATATTGAACCTGGGTCCAACAACTATATGCTGAATCGCAGAGTTGCACAAGGAGATGGATCTTTCAATTTCTCTAGGAATGGAAACACAAGTAAGCTTCAGATGGTTAATTCTCAAATTGCTAATACTTCTGGTGCTGCCTTTGAGAAAATGCTATCCCAACAAGCTTTGAAGAGGAACCTTTCATCATCTCTTCAGCCATCTGCAACAAAGCCTCTTTCATCTTCTCTTCAGTCATTTGCACCAGGAAGCAGTATGAACAGTGACAGGGGCTATATGCATGATAGTTATAGCAAGGGCAATGATGAACGGGTCATGTATCAAAATGGTGGGATTAAGAATCATCCTTCATCTTTGATGTACGGAAAGCCTATCTCTATCACACATTTAGCTAGTTCAAGTGAGTCTGCATACCATTCTGGGGCAGGGGAAGAAAGGGCTTCTGAAAATGATGAGAGACTAATTTATCAGGCAGCATTGGAGGATCTCAATCAGCCAAAAGTTGAAGCTGTGTTACCTGATGGTCTATTGTCTGTATCCCTTCTGAGACATCAGAAAATTGCCTTGGCTTGGATGCTTCAGAAGGAAACCAGAAGTTTGCATTGCTTGGGGGGAATTCTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTGCCCTCATACAGATGCAGAGGTCATTGCAGTCAAAATCAAAAGCAGATGAGGTGTGCAATCATAAAGCTGAAGCATTAAATTTGGATGATGATGATGATAATGGTAGTGGAAATGTGGAAACATCGAGAAAGAATGAAGAAGTTGATGATATAAAACCTATTCCCGAATCAGGTTGTTCATCTTCAATGCAGGTGGTTAGTAGGAAAAGGCCTGCTGCTGGTACACTGGTTGTCTGCCCTGCTAGTGTTCTCCGACAGTGGGCAAGGGAACTCGATGACAAAGTTGGAGATGAATCTAAGCTGTCTGTGTTGGTTTATCATGGGGGTAATCGGACAAAGGATCCTGTTGAACTTGCTAAATGTGATGTTGTTCTCACAACTTATTCTATTGTGACTAATGAAGTTCCAAAGCAACCTGTAGTGGAAGAGGATGAAATGGATGAAAAAAATGGGGAAAAATTTGGGTTATCGTCTGAGTTTGCTTTTGGTAAAAAGAGGAAAAAGACTTGTAATGCAAGTAAAAAGAGTAAAAAGGGTAAAAGTGGAATTGACAGTTCTTTTGAGTGTGCTTCTGGTCCCCTTGCAAGAGTTGGTTGGTTTAGGGTTATTCTGGATGAAGCTCAGACAATCAAGAATCATAGAACTCAGGTTGCTAGAGCATGTTGCAGTCTTCGAGCCAAAAGAAGGTGGTGCTTATCTGGAACGCCTATTCAAAATGCTATTGATGATTTGTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGTGTACAAATCATTCTACAATACAATTAAAGTTCCAATATCCAAAAATTCTATCCAGGGTTACAAGAAGCTTCAAGCAGTTTTGAGGGCTATAATGCTACGTCGTACAAAAGGAACATTCATTGATGGGGAACCTATAATTAAATTGCCCCCTAAAACAATTCAGCTGAATAAGGTGGATTTCTCTATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTACTCAGTTTAAGGCATATGCTGCTGCCGGTACAGTCAATCAAAATTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGCGACCACCCACTTCTGGTTAAAGATTATAGTTCCGATTTTGTTGGGGAAAATTCTATAGAAATGGCAAGAACGCTTCCAAGGGAGATGCTAGTTAATCTCTTTAATTGTCTGGAAACAACCTTTGCAATATGTAGTGTTTGCAATGATCCACCTGAAGACCCTGTCATTACCATGTGTGGCCATGTTTTTTGTTATCAGTGCGTATCAGAGTATATGACAGGTTATGATAATATGTGCCCTGTAGTTGATTGTAAAGAACAAATTGGTGATGATGTTGTTTTCTCCAAAGCTACTTTAAGAAGTTGCATCTCCGGTGATCTTGTTGATGGTAGTTCTTCAGATTCTCGTCTTGTTGATTATTCAGTTGTACAGCAGAGTAATTACAGTTCATCTAAAATCAAAGCGCTCCTTGAGATTCTGCAGTTACATTGTAAATTAAAGAGTTCTAATTCCAGCAAACTGATTTCCTCTGGATGCTGTAGAAATTCGTTTTCTTCTGAAACTTCAGATATTGAAATTTGTGATTTAGATGTCAGTGTTACAAGACACACAAGAAAATATTCAGAGAGCACAGCAGATGAACCAATAAAGGCTATTGTTTTTTCCCAGTGGACTAGCATGTTGGACTTAATCGAAGATTCATTAAGGGAATCTGGTATTAAATACAGGAGACTTGATGGTACTATGACTCTGGTTGCGAGGGATAAGTCTGTTAAAGATTTCAACACTGATCCTGAGGTAACTGTCATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAACCTGGTTGCTGCATGTCATGTTGTTCTTTTGGATCTGTGGTGGAATCCAACAACTGAAGACCAGGCTGTTGATCGAGCTCACAGAATTGGACAGACCCGTCCTGTTACTGTGACGCGGCTCACTATAAAAAATACAGTTGAAGATAGAATTTTGGCTCTCCAGGAAGACAAGAAGAAAATGGTTGCATCTGCTTTTGGCGAAGATCAAGCTGGCGGGTCTGCAACTCGCCTTACAGTGGACGACCTAAAATATCTTTTCATGGTCTAA 3021 0.4038 MAQLECIYISSSDDDLELEEIENPNYKNPPEWSARGSNAGYNGGFTLDRTFKQANALKASSSSAYTSSQAEQDIEPGSNNYMLNRRVAQGDGSFNFSRNGNTSKLQMVNSQIANTSGAAFEKMLSQQALKRNLSSSLQPSATKPLSSSLQSFAPGSSMNSDRGYMHDSYSKGNDERVMYQNGGIKNHPSSLMYGKPISITHLASSSESAYHSGAGEERASENDERLIYQAALEDLNQPKVEAVLPDGLLSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALIQMQRSLQSKSKADEVCNHKAEALNLDDDDDNGSGNVETSRKNEEVDDIKPIPESGCSSSMQVVSRKRPAAGTLVVCPASVLRQWARELDDKVGDESKLSVLVYHGGNRTKDPVELAKCDVVLTTYSIVTNEVPKQPVVEEDEMDEKNGEKFGLSSEFAFGKKRKKTCNASKKSKKGKSGIDSSFECASGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTFIDGEPIIKLPPKTIQLNKVDFSIEERAFYTKLEADSRTQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYSSDFVGENSIEMARTLPREMLVNLFNCLETTFAICSVCNDPPEDPVITMCGHVFCYQCVSEYMTGYDNMCPVVDCKEQIGDDVVFSKATLRSCISGDLVDGSSSDSRLVDYSVVQQSNYSSSKIKALLEILQLHCKLKSSNSSKLISSGCCRNSFSSETSDIEICDLDVSVTRHTRKYSESTADEPIKAIVFSQWTSMLDLIEDSLRESGIKYRRLDGTMTLVARDKSVKDFNTDPEVTVMLMSLKAGNLGLNLVAACHVVLLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIKNTVEDRILALQEDKKKMVASAFGEDQAGGSATRLTVDDLKYLFMV 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2015 1006 Gene3D - 455 595 IPR038718 -
Dere13g2015 1006 Pfam Zinc finger, C3HC4 type (RING finger) 699 744 - -
Dere13g2015 1006 SMART helicmild6 865 948 IPR001650 -
Dere13g2015 1006 ProSiteProfiles Zinc finger RING-type profile. 700 737 IPR001841 -
Dere13g2015 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 750 IPR013083 -
Dere13g2015 1006 Gene3D - 351 439 IPR038718 -
Dere13g2015 1006 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 268 546 IPR014001 -
Dere13g2015 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 584 IPR027417 -
Dere13g2015 1006 SMART ultradead3 249 563 IPR014001 -
Dere13g2015 1006 MobiDBLite consensus disorder prediction 318 357 - -
Dere13g2015 1006 Gene3D - 221 315 IPR038718 -
Dere13g2015 1006 CDD SF2_C_SNF 849 958 - -
Dere13g2015 1006 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 835 1001 IPR001650 -
Dere13g2015 1006 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 66 1005 - -
Dere13g2015 1006 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 465 596 - -
Dere13g2015 1006 MobiDBLite consensus disorder prediction 328 345 - -
Dere13g2015 1006 Pfam SNF2-related domain 256 661 IPR000330 GO:0005524|GO:0140658
Dere13g2015 1006 Pfam Helicase conserved C-terminal domain 851 948 IPR001650 -
Dere13g2015 1006 CDD DEXDc_SHPRH-like 253 584 - -
Dere13g2015 1006 SMART ring_2 700 738 IPR001841 -
Dere13g2015 1006 MobiDBLite consensus disorder prediction 135 163 - -
Dere13g2015 1006 SUPERFAMILY RING/U-box 698 753 - -
Dere13g2015 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 1005 IPR027417 -
Dere13g2015 1006 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 347 436 - -
Dere13g2015 1006 Gene3D - 599 1005 IPR027417 -
Dere13g2015 1006 ProSitePatterns Zinc finger RING-type signature. 715 724 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2015 Dere-ChrDere13 27319552 27326605 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g2015 11 906 RAD5 or RAD16-like Gene Family AT1G50410 54.595 0.0 908
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere13g2015 SNF2_N 1.1e-66 CL0023