Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2014 ATGCTTGACAATGTGGACTATGTTAGTGATTTCATTAACTCAACTTGGAGAGTTTGTTCTTCTCTAGGTGGCTGGGTTTCCAGATTAATATTGAAACCCTATAAAGACGTGCAGCTTGAATTAATATTGCATGGTTCTCTTTCTTGGTTGGCTAAGTTAAGAGAAAGTTATTCAGATTCTATGGCTCAGCTGGACTGTATATATATTAGTTCATCAGATGATGACCTGGAGCTGGAGGAGATAGAAACCTCTAATTATAGGAACCTTCCAGGATGGGCTGCTAGTGGAAGTAATGCTGGTTATGGTGGAAGGTCAAAGCAGGATAGTTCTTCTAAATGGGAAAATACTTTGAATGCAAGCTCTTCTAGAGCTTATAATCATTTCCAAGTCAAGCAGAGTACTCAACCTGGATCCAGCAACAATGTGCTGAATCAAAGAGTTGCACGAGGATATGAATCTTTCAATTTTCCAGAGAATGGAAACACAAGTCGGCATCAGGCAGTTAGTTCACGAATTGCTAATACGAGTTCTGATTATGAAAAAATACCATCTCAACAAGCTTCAAAGAGGACCGTTCCGTTGTCTCTTCAGCCATCTGCAGCCATGCCTTCTGCATCTTCTCTTCAGTCATTTGCACCAGAGACTAGCATGAACAATGACAAGGCCCATCAAAGTGAAAGCTATAGCAGGGGCAATGATGAACGCGTCATACATCAAAACGGTGGGATTAGGATTCTTCCTCCAACTTTGATGCATGGAAAGGCCATCTTTGTTACACAATCAGCTAGTTTGAACGATTCTACATATCGTTCTGTAGCAGGTGAAGAAAGGGCTACCGAGAACGATGAGAGACTAATTTATCAGGCAGCACTGGAGGATCTAAATCAGCCAAAAGTTGAAGCTACTTTACCTGATGGTCTATTGTCTGTGTCACTTCTTAGACATCAGAAAATTGCCTTGGCTTGGATGCTTCAGAAGGAAACCAGAAGTTTGCATTGCTTGGGTGGAATTCTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAAGTCATTGCAGTCAAAATCAAAAGCAGATGAGGCGTGCAATCATAAAGCTGAAGCATTAAATTTGGATGAAGATGATGATAATGGTAGTTGTAATGTGGAAACATCTAGAAAGAATGAAGAAGTCAATGATATAAAACCTGTTCCCGAATCAGATTGTTCATCTTCAATGCGGGTGGTTAGTAGGAAAAGGCCTGCTGCTGGTACACTGGTTGTCTGCCCTGCTAGTGTTCTCCGACAGTGGGCAAGGGAACTCGATGACAAAGTTGGAGATGAAGCTAAGCTGTCTGTGTTGGTTTATCATGGGGGTAATCGGACAAAGGATCCTGTTGAACTTGCTAAATATGATGTTGTTCTCACAACTTATTCTATTGTGACTAATGAAGTTCCAAAGCAACCTTTAGTGGAAGAGGATGAAATGGATGAAAAAAATGGGGAAAAATTTGGGTTATCCTCTGAGTTTGCTTTTGGTAAAAAGAGGAAAAAGGCTTGTAATGCAAGTAAAAAGAGTAAAAAGGGTAAAAGTGGAATTGACAGTTCTTTTGAGTGTGCTTCTGGTCCCCTTGCAAGAGTTGGTTGGTTTAGGGTTATTCTGGATGAAGCTCAGACAATCAAGAATCATAGAACTCAGGTGGCTAGAGCATGTTGCAGTCTTCGAGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATTCAAAATACTATTGATGATTTGTATAGCTACTTCAGATTCCTGAAGTATGATCCGTATGCTGTGTACAAATCATTCTACAATACAATTAAAGTTCCAATATCCAAAAATTCTATCCAGGGTTACAAGAAGCTTCAAGCAGTTTTGAGGGCTATAATGCTACGTCGTACAAAAGGAACATTCATTGATGGGGAACCTATAATCAATTTGCCCCCTAAAACAATCCGTCTGCATAAGGTGGATTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTACTCAATTTAAGGCATATGCAGCTGCTGGTACAGTCAATCAAAATTATGCAAATATTCTTTTAATGCTTCTACGTCTCCGTCAGGCTTGTGACCACCCACTTCTTGTTAAAGATCATAGTTCTGATTTCGTTGGGGAAAATTCTGTGCAAATGGCAAAAATGCTTCCAAGGGAGATGCTAGTTAATCTCTTTAATTGTTTGGAAACATCCTTTGCCATATGTGGTGTTTGCAATGATACACCTGAAGACCCAGTTGTTACTATGTGTGGCCATGTCTTCTGTTATCAGTGTGTATCAGAATATTTGACAGGTTATGATAATATGTGCCCTGCAGTTGATTGTAGAGAGCAAATTGGTGATGATGTTGTCTTCTCCAAAGCTACTTTAAGAAGTTGTATCTCCAGTGACCTTGGTGATAGTAGTTCTGCAAATTATCGTCATGTTGATTATTCAGTAGTACAGCAGAAAAATTATAGTTCATCTAAAATCAAAGCTGTCCTTGAGATTCTGCAGTTATATTGTAAATTAAGGAGTCCAGTTTCTGACAGACCAAGTTCCTCTGGATACGGCAGAAATTCACTGTCTTCTGAAGCTTCATATAATGAAAATCTTCTTTCAGATGTTAGTGTTACAAAACACACAAGAAAATATTCAGAGTGCACAACTGATGGACCAATAAAGGCTATTGTTTTTTCCCAGTGGACTAGCATGTTGGACTTAGTCGAAATTGCACTGGAAGAGTCTTGTGTTCAATACAGGAGGCTTGATGGTACCATGACACTGGTTGCAAGGGATAAAGCTGTTAAGGATTTTAATACTGATCCCGAGGTAACTGTCATGCTGATGTCATTAAAAGCAGGAAACCTTGGTTTGAACATGGTTGCTGCATGTCATGTTATTCTGTTGGATCTTTGGTGGAATCCGACTACTGAAGATCAAGCTGTTGATCGAGCTCATAGAATTGGACAGACCCGTCCTGTTACTGTGACACGGCTTACTGTAAAAGATACAGTTGAGGATAGAATCTTGGCTCTCCAGGAAGAGAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGATCACGCTGGTGGTTCTGCAACTCGCCTTACAGTGGATGATCTAAAATATCTTTTCATGGTCAGCACTTCTTCGGTTACTGGTTCTTCTGGAAGTAGTGTAGTGGCTGTATATTATAAGAAACCGCATACAGCCCACCTAAAGAAAGGGGCATATTCTTTAAAGCATGAAGGAAAAGTGTTTACAAAGTTGGGTTGTTACTTATTTGCGACAGGCAAAAACATAATTCCTGGATATTGGTCCTCCAATGTTGTTATTGGTGCAAAAAATCATCGCAATCCTCCGGAATCTCCGAATTCATCTTCTTGTTCCGGTTCTTTGTTCCCAATGGGATTCCACACATCCCCATTTCCCCATTCCCACTTTCTTGGAACTCCGTCTCAGCGATTCTGTTCTTGGAAACCTCTGTTGATTGCATTCAAGGCCATGAGATTAAGTAACCTTTTGGTCACATTTGGTAAATTACAAGGTCACTTAATAAGGGAGCTGGAACGTGGTTCAAGCTCAAGCTCTAAATTGATGCCTGACGACGTGGCCCATATTCTTGATTTCATCAACACAGCTCATAGAGTTTGTTTTCTTTTAGGTGGTTAG 3726 0.405 MLDNVDYVSDFINSTWRVCSSLGGWVSRLILKPYKDVQLELILHGSLSWLAKLRESYSDSMAQLDCIYISSSDDDLELEEIETSNYRNLPGWAASGSNAGYGGRSKQDSSSKWENTLNASSSRAYNHFQVKQSTQPGSSNNVLNQRVARGYESFNFPENGNTSRHQAVSSRIANTSSDYEKIPSQQASKRTVPLSLQPSAAMPSASSLQSFAPETSMNNDKAHQSESYSRGNDERVIHQNGGIRILPPTLMHGKAIFVTQSASLNDSTYRSVAGEERATENDERLIYQAALEDLNQPKVEATLPDGLLSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALIQMQKSLQSKSKADEACNHKAEALNLDEDDDNGSCNVETSRKNEEVNDIKPVPESDCSSSMRVVSRKRPAAGTLVVCPASVLRQWARELDDKVGDEAKLSVLVYHGGNRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVEEDEMDEKNGEKFGLSSEFAFGKKRKKACNASKKSKKGKSGIDSSFECASGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTFIDGEPIINLPPKTIRLHKVDFSIEERAFYTKLEADSRTQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDHSSDFVGENSVQMAKMLPREMLVNLFNCLETSFAICGVCNDTPEDPVVTMCGHVFCYQCVSEYLTGYDNMCPAVDCREQIGDDVVFSKATLRSCISSDLGDSSSANYRHVDYSVVQQKNYSSSKIKAVLEILQLYCKLRSPVSDRPSSSGYGRNSLSSEASYNENLLSDVSVTKHTRKYSECTTDGPIKAIVFSQWTSMLDLVEIALEESCVQYRRLDGTMTLVARDKAVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTVKDTVEDRILALQEEKRKMVASAFGEDHAGGSATRLTVDDLKYLFMVSTSSVTGSSGSSVVAVYYKKPHTAHLKKGAYSLKHEGKVFTKLGCYLFATGKNIIPGYWSSNVVIGAKNHRNPPESPNSSSCSGSLFPMGFHTSPFPHSHFLGTPSQRFCSWKPLLIAFKAMRLSNLLVTFGKLQGHLIRELERGSSSSSKLMPDDVAHILDFINTAHRVCFLLGG 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2014 1241 Gene3D - 410 498 IPR038718 -
Dere13g2014 1241 ProSiteProfiles Zinc finger RING-type profile. 759 795 IPR001841 -
Dere13g2014 1241 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 524 655 - -
Dere13g2014 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 1067 IPR027417 -
Dere13g2014 1241 SUPERFAMILY RING/U-box 755 800 - -
Dere13g2014 1241 ProSitePatterns Zinc finger RING-type signature. 774 783 IPR017907 -
Dere13g2014 1241 MobiDBLite consensus disorder prediction 97 116 - -
Dere13g2014 1241 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 107 1064 - -
Dere13g2014 1241 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 897 1060 IPR001650 -
Dere13g2014 1241 MobiDBLite consensus disorder prediction 153 234 - -
Dere13g2014 1241 Pfam SNF2-related domain 315 720 IPR000330 GO:0005524|GO:0140658
Dere13g2014 1241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 753 809 IPR013083 -
Dere13g2014 1241 MobiDBLite consensus disorder prediction 100 116 - -
Dere13g2014 1241 Gene3D - 280 375 IPR038718 -
Dere13g2014 1241 SMART ultradead3 308 622 IPR014001 -
Dere13g2014 1241 Pfam Helicase conserved C-terminal domain 912 1007 IPR001650 -
Dere13g2014 1241 CDD SF2_C_SNF 912 1017 - -
Dere13g2014 1241 Gene3D - 515 653 IPR038718 -
Dere13g2014 1241 MobiDBLite consensus disorder prediction 382 407 - -
Dere13g2014 1241 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 406 495 - -
Dere13g2014 1241 SMART ring_2 759 797 IPR001841 -
Dere13g2014 1241 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 327 605 IPR014001 -
Dere13g2014 1241 MobiDBLite consensus disorder prediction 155 225 - -
Dere13g2014 1241 Pfam Zinc finger, C3HC4 type (RING finger) 758 803 - -
Dere13g2014 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 643 IPR027417 -
Dere13g2014 1241 SMART helicmild6 924 1007 IPR001650 -
Dere13g2014 1241 MobiDBLite consensus disorder prediction 387 404 - -
Dere13g2014 1241 Gene3D - 658 1077 IPR027417 -
Dere13g2014 1241 CDD DEXDc_SHPRH-like 312 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2014 Dere-ChrDere13 27304974 27319402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g2014 64 965 RAD5 or RAD16-like Gene Family AT1G50410 57.080 0.0 951
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere13g2014 SNF2_N 3e-68 CL0023