Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2010 ATGGCGGGTGGAAAATCAGCGAAGTCGAACCCATCACAGGCTAGGAAGAGAGTTGATGCCGTCGATTCGCGGGCTGGTTCTGTTCTTGTCCGCGCCAAAGATGGCAGTGCTTTTGCCAAATGTGACGAGTGCAACAAGAATGTTCCAGTGGCCCTTATCAGCATGCACAGTTGCAGTCTTGAGGCTAAAATTAAAATGAATCTGGAGGCTCAAGTTGTGGAAAAGGCCGCCGAAGTCAAGATGCATGCGGAAAGGAAGAAGCCCAATTCAAAAGAACCTAAGGCAAAAAGGGCCAAGGTCGAGAAGGGGAAGAAGGTTAAGGATCCTAACAAGCCCAAGCGTCCTCCTACAGCCTTTTTTGTCTTCCTGGAAGAGTTTAGAAAATCTTTTAAGGAGGCAAATCCTGATTCAAAGGATATTAAAAGGGTTGGTAAAGAGGCAGGTGAAAAGTGGAAGTCCTTATCTGATGAAGAGAAGAAGCCTTACTTGGATAAAGCTGCTGAACTCAAGGCAGAATATGAGAAGGCTTTAGAAAGTTATAATGCTGCAGAAAATGGAGATGGTCAAGAGGGGTCTGATAAGGAAGACGCAGCCGAGGAAGTTGGTCAAGAGCGGTCTGATGGGGATGACACAGCAAAGGAAGCGGAAGAGATCACTGATGAGGAGTAG 669 0.4679 MAGGKSAKSNPSQARKRVDAVDSRAGSVLVRAKDGSAFAKCDECNKNVPVALISMHSCSLEAKIKMNLEAQVVEKAAEVKMHAERKKPNSKEPKAKRAKVEKGKKVKDPNKPKRPPTAFFVFLEEFRKSFKEANPDSKDIKRVGKEAGEKWKSLSDEEKKPYLDKAAELKAEYEKALESYNAAENGDGQEGSDKEDAAEEVGQERSDGDDTAKEAEEITDEE 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2010 222 MobiDBLite consensus disorder prediction 79 116 - -
Dere13g2010 222 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 112 181 IPR009071 -
Dere13g2010 222 Coils Coil 163 186 - -
Dere13g2010 222 SMART hmgende2 111 182 IPR009071 -
Dere13g2010 222 MobiDBLite consensus disorder prediction 178 222 - -
Dere13g2010 222 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 14 199 - -
Dere13g2010 222 CDD HMG-box_AtHMGB1-like 113 173 - -
Dere13g2010 222 MobiDBLite consensus disorder prediction 1 26 - -
Dere13g2010 222 Pfam HMG (high mobility group) box 112 181 IPR009071 -
Dere13g2010 222 Gene3D High mobility group box domain 95 193 IPR036910 -
Dere13g2010 222 MobiDBLite consensus disorder prediction 133 162 - -
Dere13g2010 222 SUPERFAMILY HMG-box 103 182 IPR036910 -
Dere13g2010 222 MobiDBLite consensus disorder prediction 79 112 - -
Dere13g2010 222 MobiDBLite consensus disorder prediction 188 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2010 Dere-ChrDere13 27271960 27273786 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dere13g2010 HMG_box 9.3e-22 CL0114