Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2003 ATGAACAAACTTGCTTCAACCTCACCTGCTCGAGACAATAGTGCTAATTCTTCTGATGCTGCTTCCTCTGAAAATAATGGGGTGATCCTTCCCAAAAGAAAAAGAAGACCTCCAGGAACACCAGATCCAGATGCTGAGGTTGTGTGTTTGTCACCGAAGACCTTGCTGGAATCAGACAGATATGTGTGCGAGATCTGTAATCAAGGGTTTCAGAGAGACCAGAATCTTCAGATGCATAGAAGAAGGCATAAAGTGCCTTGGAAATTGCTGAAGAAGGAGAGTAGTAGCACCCAAGAGGTGAAGAAGAAGGTGTTCGTGTGCCCTGAGCCTACTTGTTTGCACCATAATCCTTGCCATGCTCTTGGAGATCTTGTGGGCATCAAGAAGCATTTTAGAAGAAAGCATAGTAATCATAAGCAGTGGGTTTGTGAGAAGTGCTCTAAAGGATACGCTGTTCAGTCTGATTACAAAGCCCACCTCAAAACCTGTGGTACGAGAGGCCATTCCTGTGACTGTGGTCGTGTCTTTTCCAGGGTAGAGAGTTTCATAGAACATCAAGACGCCTGCACTGTTCGAACAGCTTCAAGCACAAGTCCATCCAGTGAGGCCAATTTAGCCCCATTAATGCAAGGCTTGCCTATGCCAAAACCACCTGCTTTGTTAACCTCGGACTTACAAAACAACAGGCCCTCCTACACCTCTTCTCAAAAACATAATCTGGAAGAACTTCAGCTCCTACGTTGTTCTTTTGCTGATGCTCGAGGAAACCGAGGTTCTGATCACGAGGAGGACAACAACTATGAAACTGATCCAACCCATTTAAAGCTATCAATAGGGTCATGCAGTAACAATATTAATAATAACCATAGCAATGCTATGAACGAAGCAGAAGGAGAAGAAGCACCAAGATTCATGGAAGTGGGGTGGTTGAAAGAGAGTGCTGGTGAAGAGCTGAAGTTGGCGATGGCTGAAAAGGCTTATGCAGAAGAGGCTAGAAGAGAGGCTAAGCGTGAGATACAGATGGCTGAGGTTGAGTTTGGGAAGGCAAAGAGGATAAGGAAGGAAGCTCAGGAGGAGCTTGAAAGGGCTGAGGCTTTGAAGAAGCAAGCCACGATGAAGATGAGTTCTACTCTTTTGCAAATTACTTGTCAGGCTTGTAAGCAACAATTCCAATCTTCCATTGTTGGAGTTTCATCAGAAGAGACATCTATAGTAATGAGCTACATGTCCTCACCCACCACTGAAGGGGAAGGGGAATAA 1260 0.45 MNKLASTSPARDNSANSSDAASSENNGVILPKRKRRPPGTPDPDAEVVCLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKKESSSTQEVKKKVFVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRTASSTSPSSEANLAPLMQGLPMPKPPALLTSDLQNNRPSYTSSQKHNLEELQLLRCSFADARGNRGSDHEEDNNYETDPTHLKLSIGSCSNNINNNHSNAMNEAEGEEAPRFMEVGWLKESAGEELKLAMAEKAYAEEARREAKREIQMAEVEFGKAKRIRKEAQEELERAEALKKQATMKMSSTLLQITCQACKQQFQSSIVGVSSEETSIVMSYMSSPTTEGEGE 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2003 419 SMART c2h2final6 105 135 IPR013087 -
Dere13g2003 419 SMART c2h2final6 61 83 IPR013087 -
Dere13g2003 419 SMART c2h2final6 141 168 IPR013087 -
Dere13g2003 419 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Dere13g2003 419 Gene3D Classic Zinc Finger 126 204 - -
Dere13g2003 419 SUPERFAMILY beta-beta-alpha zinc fingers 58 84 IPR036236 -
Dere13g2003 419 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 393 IPR031140 -
Dere13g2003 419 Coils Coil 318 373 - -
Dere13g2003 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Dere13g2003 419 MobiDBLite consensus disorder prediction 1 25 - -
Dere13g2003 419 FunFam protein indeterminate-domain 12-like 40 111 - -
Dere13g2003 419 MobiDBLite consensus disorder prediction 1 46 - -
Dere13g2003 419 Gene3D Classic Zinc Finger 39 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2003 Dere-ChrDere13 27211222 27213745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g2003 32 419 C2H2 Transcription Factor Family AT2G01940 55.107 1.44e-144 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere13g2003 None None None