LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere13g2001	ATGGGAGTTGTCGATCCGTACGCACCGCTTTCTTTTTGTGTTTTGTCTGTTTGGGTGCTAGGGAAATGTAGGAATCATAGGGATTTTCAGATCGTGAACTTTCCGCTTTTCGTTCTCATGGACGATGATGCGTTGAACATGCGCAATTGGGGTTATTATGAACCCTTCAAAGGGGGGCATCTCGGCCTGCAGCTCATGTCAAGTATGACAGATCGAGACACCAAGCCATTTATGCCGGGCCGTGATCCTACAATGCTAGTTAGTCCAAATGGAACCTTTCACCCTCGTGATTGTGTTGTGTCGGAAGCACCAATTCCAATGAACTATGTTAGAGACAGTTGGATAAGCCAGAGAGATAGGTTTCTCAATATGTTGCCCACAAATCCTAATTATGCTGTTCTTCCAGAAACATCAGGAGCTCCGTCCTTGCAAATCATACAGCCACCTGATACTGGGAGAGATGATAGAGTGAATCAAATTGAAGACCCTCCTGTTAAAAAGGAAGGTGGCCAATTGAAGAAAAGGCAAAGTGGGGCTGCTCCCAAGACTCCAAAGGCGAAAAAGCCAAGGAAGCCGAAGGATAATAGCAATGGTTTAGTACAACGTGAGAAGCCAGCCAGGAAGGCTATGGAGGTTGTAATAAATGGAATTGATATGGACATTTCTGGTCTACCCATTCCAGTTTGCTCATGTACTGGGACTCCTCAGCAGTGTTATCGATGGGGCTGTGGTGGTTGGCAATCAGCTTGTTGTACAACAAATGTGTCAATGTATCCCTTGCCAATGAGCACTAAAAGGCGTGGTGCAAGGATAGCTGGACGGAAAATGAGTCAAGGTGCTTTTAAGAAGGTCTTGGAAAAACTTGCTGCCGAAGGTTATAATTTTGCTAATCCAATTGATCTGCGGACTCACTGGGCTAGACATGGCACCAACAAGTTTGTCACTATCAGGTAG	954	0.4549	MGVVDPYAPLSFCVLSVWVLGKCRNHRDFQIVNFPLFVLMDDDALNMRNWGYYEPFKGGHLGLQLMSSMTDRDTKPFMPGRDPTMLVSPNGTFHPRDCVVSEAPIPMNYVRDSWISQRDRFLNMLPTNPNYAVLPETSGAPSLQIIQPPDTGRDDRVNQIEDPPVKKEGGQLKKRQSGAAPKTPKAKKPRKPKDNSNGLVQREKPARKAMEVVINGIDMDISGLPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR	317

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere13g2001	317	MobiDBLite	consensus disorder prediction	154	173	-	-
	Dere13g2001	317	MobiDBLite	consensus disorder prediction	190	207	-	-
	Dere13g2001	317	PANTHER	-	40	317	IPR010409	-
	Dere13g2001	317	SMART	GAGA_bind_2	40	317	IPR010409	-
	Dere13g2001	317	Pfam	GAGA binding protein-like family	40	317	IPR010409	-
	Dere13g2001	317	MobiDBLite	consensus disorder prediction	133	207	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere13g2001	Dere-ChrDere13	27183947	27185252	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere13g2001	40	317	BBR or BPC Transcription factor family	AT2G01930	59.060	1.66e-110	320

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BBR-BPC	Dere13g2001		GAGA_bind	1.3e-111	No_clan