Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1972 ATGATTGGAGGGAAAGATCTCCCTAGTGGTCTTGACTCTGACGGGGAGACCTCTCGGAGCAAGCTGTCAAAGCCCATTTTTGGCCAAAGCAAGGACGACCCAGAAGAGAAATTAGGTTATCCAGAAAAAGGTACATATTTTCTTAAAGATTCAGAGGAGGGTGGTGATGGGATTCTATTGAAACCCTCAAAAGTTGGGACTTCAGGTGTACAAGAGCTAACCCTGAGTTACCTTTGTGATAAGGAGATTCATGGTAAAAGCTTACTGAATTCCTTGGAAAAAGTCAGTTGCAAAGGTAAAGAAGTTATTGTTTCAGAAAATTCAAATCAGGATGAGAAATGGGTCGAAAGGGATTTTCTGAATTTGAGTGAAACTAGGGAGAATTCTTCAAAGCGATCAGTTGAAGAAGAGATTGAAAGGGAAATTAAGGACAAAAAGCCGAAGCTGGAGACGCTTAGTCTCTCTCTTGCTTTGCCTGATGTTTCGCTTTCTCTCACGGCGTCAAACGCCCTACAAAACGGTGATCAGCCAGTTAGGCCAAAGCCCAGCAAACCGTCAACGACTACGTATTCAAATGATTATACAACGGCTTCTCTATCATACTCGTACTCTCATCCCTTCTCGCACAACCCAAGTTGCTCGCTTACCCGTAAGTCGACTGATAATTTTGATTATTCAGTCAGCAAAGATGATCATATTTGGAACTGCGGAGAGGGGACAAATGGCTCAGTTCATAGTCGGTTCAAGCCAATAGGAGATGGGGTTGCCTTGTCGAATCATGGTGGTGGTGGGCTTAATTCGATTATGCAGGGTAATAATAGTCAGTATAAAACTACAAGTTCGGATAATCATTCTTTCTTTCCGTCTGAATTGCCTGCCAGGCCAAGATTTGAAGCTCAGTCAGGGGACTCGAGAGGAAGGAATTCTGAGAATGTGAGAGGATTGGAAGGTTTAGATAGTGGGAAAATAAGGAAGCTTTCTAGACCAGAGAGAATTCTCAGAGAGATTGTTTTGGAGTCTATCCCTGCCATGGCTTTGACATTTCAGGAGCTTACTGATGAAGTAATTGCATCGACCAAGGAATACTTAAAAAATCTCATTGAAATGCCCGAGAAGAAAGAGGAATTGGTCAGCCTCCAAAATCGGCTCGAGAGAAGATCTGACCTTACCAAGGAGACTCTTTCGAAGTGCCACAAAGGGCAACTAGAGATTTTAGTTGCTGTCAAGATGGGGCTTGCAAGCTTCTTATCCGGCAAAGTTCACTTGTCTGAGATGGTAGAGATTTTCTTGTATATGAGATGTAGAAATGTTAACTGCAAGAGCTTGCTTCCTGTCGATGACTGTGACTGCAAGGTTTGCTCTGGAAATAAGGGATTTTGCAGTTCTTGCATGTGTCCTGTCTGTTTGAATTTTGATTGTGCAAACAACACATGCATCTGGGTTGGTTGTGATGTTTGTTCCCACTGGTGCCATGCTGTCTGTGGCATTAAGAAGAATTTTATCAAACCTGGGCCTAGCTTAAAAGGGCCGTCAGGGACCACTGAGGTGCAGTTTTATTGCTTTGGTTGTGGACATGCTTCAGAAATGTTTGGCTTTGTTAAAGATGTATTCATGTGTTGTGCAAAGGATTGGGGTCTAGAAACCCTGGTGAAAGAGCTTGACTGTGTAAGGAGGATTTTCAAAGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTTAAAACTGATGAAATGCTCTTCAAGCTTCAAACTAAAATGGTATCTCCTTTGGATGCCTGCAATTACATCCGACAATTTTTCAACTATGCAGATGGCATGTCAGACTTTCCTGCATCGGGTATATCTTCAAAGGATTTGGCAGCATCTCAAGCTAATCTTAGGAAGGAAGCAACATCTCTTTCACAATCTAATTCTCTAATGTCAAAATATACTTATAACTCAATCTATTCGAGGTCACAATGTGATGTTCTGTCAAATGATCTTCATCAAAAAGATTTCAAAACCTCCCTGTTAAATGAACTGAAAAATGAGAGTGATTTCCAGTTGGGGACTTTGTTAAGAAAAGGTGGGCTTGATAACTTGGAGAGCATTGTGAGGATAAAGGAAGCAGAAGCCAGAATGTTCCAAAGCAAGGCAGATGAAGCACGGAGAGAAGCTGAAGGATTCCAGAGGATGATAAGGACCAAGACTGCGCAGATGGAAGAAGAGTATGCCGAAAGGCTTGCCAAGCTCTCTCTGCAAGAGACCGAGGAAACTCGGAGGAAGAAGTTGGAGGAATTGAAAGTCTTAGAAAATTCCCATTGTGATTACTACAATATGAAAATGAGAATGCAGGCTGAGATTGCTGGTTTGTTGAAGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA 2391 0.4228 MIGGKDLPSGLDSDGETSRSKLSKPIFGQSKDDPEEKLGYPEKGTYFLKDSEEGGDGILLKPSKVGTSGVQELTLSYLCDKEIHGKSLLNSLEKVSCKGKEVIVSENSNQDEKWVERDFLNLSETRENSSKRSVEEEIEREIKDKKPKLETLSLSLALPDVSLSLTASNALQNGDQPVRPKPSKPSTTTYSNDYTTASLSYSYSHPFSHNPSCSLTRKSTDNFDYSVSKDDHIWNCGEGTNGSVHSRFKPIGDGVALSNHGGGGLNSIMQGNNSQYKTTSSDNHSFFPSELPARPRFEAQSGDSRGRNSENVRGLEGLDSGKIRKLSRPERILREIVLESIPAMALTFQELTDEVIASTKEYLKNLIEMPEKKEELVSLQNRLERRSDLTKETLSKCHKGQLEILVAVKMGLASFLSGKVHLSEMVEIFLYMRCRNVNCKSLLPVDDCDCKVCSGNKGFCSSCMCPVCLNFDCANNTCIWVGCDVCSHWCHAVCGIKKNFIKPGPSLKGPSGTTEVQFYCFGCGHASEMFGFVKDVFMCCAKDWGLETLVKELDCVRRIFKGSEDRKGKELHVKTDEMLFKLQTKMVSPLDACNYIRQFFNYADGMSDFPASGISSKDLAASQANLRKEATSLSQSNSLMSKYTYNSIYSRSQCDVLSNDLHQKDFKTSLLNELKNESDFQLGTLLRKGGLDNLESIVRIKEAEARMFQSKADEARREAEGFQRMIRTKTAQMEEEYAERLAKLSLQETEETRRKKLEELKVLENSHCDYYNMKMRMQAEIAGLLKRMEATKQQWV 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1972 796 Pfam Coiled-coil region of Oberon 660 785 IPR032535 -
Dere13g1972 796 MobiDBLite consensus disorder prediction 1 42 - -
Dere13g1972 796 MobiDBLite consensus disorder prediction 169 191 - -
Dere13g1972 796 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 99 795 IPR004082 -
Dere13g1972 796 MobiDBLite consensus disorder prediction 296 315 - -
Dere13g1972 796 Coils Coil 698 732 - -
Dere13g1972 796 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 544 563 IPR004082 -
Dere13g1972 796 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 386 401 IPR004082 -
Dere13g1972 796 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 731 753 IPR004082 -
Dere13g1972 796 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 692 712 IPR004082 -
Dere13g1972 796 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 425 446 IPR004082 -
Dere13g1972 796 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 347 369 IPR004082 -
Dere13g1972 796 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 471 491 IPR004082 -
Dere13g1972 796 MobiDBLite consensus disorder prediction 26 42 - -
Dere13g1972 796 Coils Coil 746 766 - -
Dere13g1972 796 CDD PHD_OBE1_like 464 523 IPR047578 -
Dere13g1972 796 Pfam PHD - plant homeodomain finger protein 434 558 IPR032881 -
Dere13g1972 796 Coils Coil 774 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1972 Dere-ChrDere13 26844095 26848805 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1972 434 638 PHD Gene Family AT5G57380 24.878 1.30e-10 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1972 13 26844095 26848805 Dere13g1972 13 26844095 26848805 ECH