Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1971 ATGATGACGCCAAATTTGAACTTTGAACCTGAAAATAATTCAGAAGTCAGCAGCCAAGTAGCTTCCAATATATCCTTGCAAGAAACATCCCGTGATCTTACTAAGGACAGCACCACCACTTCTTCCTGTCTCACAAATCTCACAAAACCTGAACCTGATATGGGCTCTGTATCCCTTGACTTGACACTCAACTGCAACTCCAACGATGGTGAGTTGAAGCGCACGAGTGATGCCAGCAGTGAAGTAGGAGCTGAAACTCAAGTTTCAGGATCAGCAATTCCTAGGGTTTTCTCTTGTAATTACTGTAGGAGGAAGTTCTTCAGCTCGCAGGCATTGGGTGGCCATCAAAATGCTCATAAAAGGGAGAGGACAATAGCAAAGCGCGCCATGCGAATGGGAATGTTCACCGAGAGGTATACAAGCTTGGCGTCTCTGCCCCTTCATGGTTCTGCTTATAGATCTCTTGGTATTGAAGCTCATGCTGCAATGCACCGAAGACCTATGCCATCACTGAGGGCTCCTGATCTAAGAGCTGGGGCAAAATTCGATAAAGACTATTTTGGATCACCGATGTTCATGGAAGATGATGACAATATGGGTCTGTTTTGGCCTGGGAGTTTCCGGCAGGTGGATGGAGGAGTCGGGATTAGTTTGGGACATGAACATGCTCAAACTTCAAATACTAATTTTGTAGCAATTGCACCACCACCACCACCACCACCACTACCACCTCCACAAGCACAAACATCCACATCTCCAGATCTCACTCTGAAGCTTTAA 780 0.4603 MMTPNLNFEPENNSEVSSQVASNISLQETSRDLTKDSTTTSSCLTNLTKPEPDMGSVSLDLTLNCNSNDGELKRTSDASSEVGAETQVSGSAIPRVFSCNYCRRKFFSSQALGGHQNAHKRERTIAKRAMRMGMFTERYTSLASLPLHGSAYRSLGIEAHAAMHRRPMPSLRAPDLRAGAKFDKDYFGSPMFMEDDDNMGLFWPGSFRQVDGGVGISLGHEHAQTSNTNFVAIAPPPPPPPLPPPQAQTSTSPDLTLKL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1971 259 Gene3D Classic Zinc Finger 76 143 - -
Dere13g1971 259 SUPERFAMILY beta-beta-alpha zinc fingers 95 124 IPR036236 -
Dere13g1971 259 MobiDBLite consensus disorder prediction 232 248 - -
Dere13g1971 259 FunFam Zinc finger protein 2 73 143 - -
Dere13g1971 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Dere13g1971 259 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 171 IPR044246 GO:0009788
Dere13g1971 259 MobiDBLite consensus disorder prediction 229 259 - -
Dere13g1971 259 MobiDBLite consensus disorder prediction 1 51 - -
Dere13g1971 259 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1971 Dere-ChrDere13 26835362 26836141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1971 91 259 C2H2 Transcription Factor Family AT1G66140 43.523 2.87e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere13g1971 None None None