Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1970 ATGGGGAAGAAGAAGAAGAGGGTTTCTTCCAAGGTGTGGTGTTACTATTGCGATCGGGAATTCGATGACGAGAAGATTTTGGTTCAGCATCAGAAAGCTAAGCACTTCAAATGTCATGTCTGCCACAAGAAGCTCTCCACTGCTGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAAAGCGTCACCAAGGTGCCCAATGCAAAACCTGGCAGAGAGTCAACAGATATTGAAATATATGGAATGCAAGGGATCCCACCAGACGTCTTGGCTGCTCACTATGGAGACGAAGAGGATGAGGTTCCATCAAAAGCAGCCAAAGTGGATATCTCATCTACTCAACTTGCAGGTGGAGTAGTTCCGGCGCCATTAGGCATGGGATATCCTCCTCAATCAACCTTGGGTGCAATGCCACCTATTTATAATCCAGCAATACACGTGCCTCCGGCAGCTTGGGCGGTTCCACCTCGACCTCAGCCTTGGTATCCGCAACCTCCGTCTGTTTCCATTCCTCCTCCTGCCCCATATGTACAGCAGCCATTATTTCCTGTTCAGAATGTGAGGCCACCACTGCCATCAACAGCTTCTCCTACACTTTCAACATCTCAGGTTACTCCTCCTGGATTGCCGCCATCGACATCTGTTCCAGTTTCCCAACCTTTGTTTCCTGTTGTTGGAAATAATAGTACGACTACACTGAGTTCAACTTTGTCTGCCCCATCGCTATCTATCAGTGTTCCATCTGCCTTGCCTACAAGTGTCCCTCTTGATGCATATTCAGGAGTGACATCAAGTAACTCACATTCTTATGCTTCTGGGCCAAATACTGGTGGTCCTTCAATTGGCCCACCCCCGGTAATTGCAAACAGAGCTCCAGCTACTCAACCTGCCACCAACGAGGTCTATTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCCTTGCCAAAATACCAGGTGCATGATGAAACTAGCCAGATGAGCTCCATTGATGCAGCCATAGACAAGAGGATACTTGAAAGCAGGCTAGCTGGTCGAATGGCATTTTAG 1065 0.4854 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGDEEDEVPSKAAKVDISSTQLAGGVVPAPLGMGYPPQSTLGAMPPIYNPAIHVPPAAWAVPPRPQPWYPQPPSVSIPPPAPYVQQPLFPVQNVRPPLPSTASPTLSTSQVTPPGLPPSTSVPVSQPLFPVVGNNSTTTLSSTLSAPSLSISVPSALPTSVPLDAYSGVTSSNSHSYASGPNTGGPSIGPPPVIANRAPATQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDETSQMSSIDAAIDKRILESRLAGRMAF 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1970 354 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Dere13g1970 354 PANTHER ZINC FINGER PROTEIN 207 1 354 - -
Dere13g1970 354 MobiDBLite consensus disorder prediction 263 287 - -
Dere13g1970 354 MobiDBLite consensus disorder prediction 190 215 - -
Dere13g1970 354 MobiDBLite consensus disorder prediction 190 209 - -
Dere13g1970 354 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Dere13g1970 354 SMART c2h2final6 12 35 IPR013087 -
Dere13g1970 354 SMART c2h2final6 36 59 IPR013087 -
Dere13g1970 354 Gene3D Classic Zinc Finger 1 66 - -
Dere13g1970 354 CDD SUF4-like 13 92 - -
Dere13g1970 354 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Dere13g1970 354 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1970 Dere-ChrDere13 26806898 26813748 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1970 1 352 C2H2 Transcription Factor Family AT1G30970 63.172 1.48e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere13g1970 None None None