Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1966 ATGGGTATGAAGATGCAGAGTCAGCAACAGCACCAGCACCACCCTGTGGCTTTGAGGTTCCATGAGCAAACGGGGAGTAAAAGAAAGTACACTTTCATTCAGGCTAAAAGAGCTTGGCTCCCGAAATTGCTGCTGCTGTGGATCATGCTGATGATGCTTATCAGTGGGTCCATCTACAATGGTATGGATGCCGATAATAAAGTTAGGAGGAGAGAGGTTCTGGGTAGCCTCTGTGAGCAAAGGGCTAGAATGTTGCAAGATCAATTTAGTGTTAGTGTTAACCATGTTCATGCCCTAGCCATTTTGGTTTCAACCTTTCATTACTACAGAAACCCATCTGCAATTGACCAGGAAACCTTTGCGGAGTATACGGCCAGGACAGCATTTGAGCGGCCCTTACTGAATGGGGTGGCCTACGCACAAAGGGTAGTTGACTCTGAAAGAGAAAATTTTGAGAGGCAACATGGATGGGTGATAAAGACAATGGAAAGAGAGCCTTCCCCGGTTCGAGACGAGTATGCACCAGTGATATTTGCCCAAGAAACTATCTCTTATCTTGAATCTATTGATATGATGTCAGGGGAGGAGGACCGAGAAAACATTTTGAGGGCGAGGGCCACTGGGAAAGCTGTTCTCACTAGCCCGTTCAGGCTGTTGGGTTCTCATCATCTTGGTGTGGTGTTGACATTCCCTGTTTACAAATCTAAGCTCTCTTCAGAGCCAACTGTGGAAGAACGCGCTGAGGCAACGGCGGGATATGTTGGTGGATCCTTTGATGTTGAATCCCTAGTGGAAAATTTACTTGGGCAACTTGCTGGTAACCAAGCAATTTTGGTGCACGTGTATGATATCACAAACTCTACTAACCCGCTAATAATGTATGGCAATCAATATGAAGAAGGTGATAAGTCTCTTGTACATACAAGCAAGCTTGACTTTGGAGATCCTTACAGGAAACATCAGATGATATGTAGGTATCATCACAAGGCACCAACATCATGGACAGCGCTTACCACGGCATTCCTATTCTTTGTGATTGGTTTATTACTGGGATACATTTTATATGGTGCTGGAATTCATATTGTTAAAGTTGAGGATGATTTCCATGAAATGCAGGAACTTAAAGTTAGAGCAGAAGCTGCTGATATTGCCAAATCCCAGTTTTTAGCTACTGTCTCACATGAAATTAGAACGCCAATGAATGGGATCCTAGGCATGCTTGGTCTGCTTCTAGATACAGAATTGAGTTCAACTCAACGAGACTATGCTCAGACTGCTCAAGCATGTGGAAAGGCACTGATAGCACTAATAAATGAGGTGCTTGACCGTGCTAAAATTGAAGCTGGCAAGTTAGAGCTCGAAGCAGTTCCATTTGACCTTCGATCCATACTTGATGATGTCCTCTCTTTATTTTCTGAGAAGTCTAGACACAAAGGTTTGGAGTTGGCAGTCTTTGTTTCTGATAAAGTTCCATATATTGTTATGGGGGATCCTGGGAGATTCAGACAAATAATTACAAATCTTGTTGGCAACTCTGTTAAATTTACTGAACGAGGACACATATTTGTTAAGGTCCATCTAGCTGAAAATAGAAATGCCACAATGAATGGAAAATCAGAGACTTATCTAAATGGAGGATCAGATGATGTTGTGCATACATCTGGTGGTTATCAGTTCAAAACCCTTAGTGGATGTGAAGCAGCTGATGAACGGAACAGCTGGGATAATTTTAAGCATCTAATTGCTGATGAAGAATTTTGCTTTGATGCTTCAAGTAAAAAGTTGACCACTATTCAAGCTTCTGAGCAAGTCACTCTCATGGTCTCTGTGGAGGATACTGGAATTGGGATTCCTTTCTCTGCCCAGGATAGGATTTTCATGCCTTTTGTGCAGGCAGACAGCTCAACCTCCCGAAACTATGGTGGAACTGGTATTGGCTTGAGCATTAGTAAGTGTCTGGTTGAACTAATGGGTGGTCAGATAAACTTCATAAGCCAACCCCAGGTTGGGAGCACATTTTCCTTCACTGCAGTTTTTGGAACATATAAGAAAACTTCAATCAGTGATGTGAAGAAACTTAATGTGGAAGATCTACCTTCTAGTTTTAGAGGACTGAAAGCCATAGTGGTTGATGGAAAACCTGTGAGAGCTGCTGTGACTCGATACCATCTGAAGAGGCTAGGGATAATAGTTAAAGTTGCAAATAATATCAATGAGGCTGTTTCTTTATGTGGGAAAAATGGTTCCTTGGCATCTGGAATATTCCAGCCTGATATAATTTTGGTTGAGAAGGACTCGTGGATTTTTGGAGAGGATGGGAGCTTCAATGTTTGGCAACTAGACTGGAAACAGAACGGGCATACGATTAAGTTGCCTAAAATGATCCTTCTTGCAACCAATATTAGTAATACTGAGTTTGACAAAGCTAAGGCAGCAGGTTTTGCTGATACTGTGATCATGAAACCTCTGAGAGCTAGTATGGTAGCTGCTTGTCTCCAGCAAGTTCTTGGGGTGGGGAAGAAGAGGCAACAAGGAAAAGACATGCCTAATGGCTCCACTTTTCTTCGAAGCCACCTTTGTGGAAAGAAAATTTTGGTGGTAGATGACAATGTGGTAAACCGGAGGGTTGCTGCAGGTGCCTTAAAAAAGTTTGGAGCTGATGTAAAGTGCGTTGAAAGTGGCAAAGCTGCGCTTGAAATGCTTCAATTGCCTCACTGTTTCGATGCCTGCTTTATGGACATTCAGATGCCAGAAATGGATGGGTTTGAAGCCACACGTCGAATCCGGATGATGGAAAGCAAGGCAAATGAGCAGACAAATGGTGGATCTAATGAAGGAAATGCCTTGAAAAGTGAGTGGCATGTGCCAATACTAGCCATGACAGCTGATGTAATTCATGCTACCTACGACGAGTGCCTGAAATGTGGTATGGATGGATATGTCTCTAAGCCCTTTGAGGAAGAGAATCTCTATCAAGCTGTTGCAAAGTTCTTCAAATCCAAGCCCATCTCAGACTCATGA 3021 0.4293 MGMKMQSQQQHQHHPVALRFHEQTGSKRKYTFIQAKRAWLPKLLLLWIMLMMLISGSIYNGMDADNKVRRREVLGSLCEQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLNGVAYAQRVVDSERENFERQHGWVIKTMEREPSPVRDEYAPVIFAQETISYLESIDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLSSEPTVEERAEATAGYVGGSFDVESLVENLLGQLAGNQAILVHVYDITNSTNPLIMYGNQYEEGDKSLVHTSKLDFGDPYRKHQMICRYHHKAPTSWTALTTAFLFFVIGLLLGYILYGAGIHIVKVEDDFHEMQELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLGLLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPYIVMGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAENRNATMNGKSETYLNGGSDDVVHTSGGYQFKTLSGCEAADERNSWDNFKHLIADEEFCFDASSKKLTTIQASEQVTLMVSVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISQPQVGSTFSFTAVFGTYKKTSISDVKKLNVEDLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGIIVKVANNINEAVSLCGKNGSLASGIFQPDIILVEKDSWIFGEDGSFNVWQLDWKQNGHTIKLPKMILLATNISNTEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGVGKKRQQGKDMPNGSTFLRSHLCGKKILVVDDNVVNRRVAAGALKKFGADVKCVESGKAALEMLQLPHCFDACFMDIQMPEMDGFEATRRIRMMESKANEQTNGGSNEGNALKSEWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFKSKPISDS 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1966 1006 FunFam Histidine kinase 3 857 1002 - -
Dere13g1966 1006 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 496 678 IPR003594 -
Dere13g1966 1006 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 438 676 IPR036890 -
Dere13g1966 1006 ProSiteProfiles Response regulatory domain profile. 706 836 IPR001789 GO:0000160
Dere13g1966 1006 Coils Coil 434 454 - -
Dere13g1966 1006 SUPERFAMILY CheY-like 861 998 IPR011006 -
Dere13g1966 1006 ProSiteProfiles CHASE domain profile. 111 323 IPR006189 -
Dere13g1966 1006 SMART CHASE_2 111 296 IPR006189 -
Dere13g1966 1006 SMART REC_2 862 994 IPR001789 GO:0000160
Dere13g1966 1006 ProSiteProfiles Response regulatory domain profile. 863 998 IPR001789 GO:0000160
Dere13g1966 1006 Pfam His Kinase A (phospho-acceptor) domain 384 449 IPR003661 GO:0000155|GO:0007165
Dere13g1966 1006 CDD REC_hyHK_CKI1_RcsC-like 864 994 - -
Dere13g1966 1006 SMART HKATPase_4 496 681 IPR003594 -
Dere13g1966 1006 Gene3D - 856 1004 - -
Dere13g1966 1006 Gene3D - 700 840 - -
Dere13g1966 1006 PANTHER TWO-COMPONENT HISTIDINE KINASE 26 995 - -
Dere13g1966 1006 SMART HisKA_10 384 449 IPR003661 GO:0000155|GO:0007165
Dere13g1966 1006 Gene3D CHASE domain 115 330 IPR042240 -
Dere13g1966 1006 Pfam Response regulator receiver domain 864 994 IPR001789 GO:0000160
Dere13g1966 1006 CDD HisKA 384 445 IPR003661 GO:0000155|GO:0007165
Dere13g1966 1006 Pfam CHASE domain 114 294 IPR006189 -
Dere13g1966 1006 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 450 IPR036097 GO:0000155|GO:0007165
Dere13g1966 1006 SUPERFAMILY CheY-like 702 837 IPR011006 -
Dere13g1966 1006 FunFam Histidine kinase 4 356 447 - -
Dere13g1966 1006 Gene3D - 62 114 - -
Dere13g1966 1006 CDD HATPase_EvgS-ArcB-TorS-like 501 679 - -
Dere13g1966 1006 Gene3D - 360 447 - -
Dere13g1966 1006 Gene3D - 448 683 IPR036890 -
Dere13g1966 1006 PRINTS Bacterial sensor protein C-terminal signature 665 678 IPR004358 GO:0016310|GO:0016772
Dere13g1966 1006 PRINTS Bacterial sensor protein C-terminal signature 624 634 IPR004358 GO:0016310|GO:0016772
Dere13g1966 1006 PRINTS Bacterial sensor protein C-terminal signature 641 659 IPR004358 GO:0016310|GO:0016772
Dere13g1966 1006 PRINTS Bacterial sensor protein C-terminal signature 606 620 IPR004358 GO:0016310|GO:0016772
Dere13g1966 1006 ProSiteProfiles Histidine kinase domain profile. 391 681 IPR005467 -
Dere13g1966 1006 FunFam Histidine kinase 4 115 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1966 Dere-ChrDere13 26764948 26771408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1966 1 1006 Histidine Kinase Gene Family AT2G01830 71.176 0.0 1438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere13g1966 HATPase_c 3.5e-32 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1966 13 26764948 26771408 Dere13g1966 13 26764948 26771408 ECH