Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1962 ATGGAGAAACCCCATGTGGGTTTCGGGGTTTCTTTCTTATATCGTATCGTTTTGGTTCTTTCCGCGGTCTTATTGGCATGTTCTCAAGACGCAGATGTTATGGGCATTCTCAAGAATGCGATCAACGGGGCAAGATCGCTCCAGTGGTCCAACCCGGATGTCTGCAAATGGAATCACGTTCAATGCAACTCTGCGAAACGGGTTACGGCAATTCAGATTGGGAACCTGAACCTGCAAGGCTCACTCCCGAAGGAACTATCAAAACTCGCAGAACTGCAGCGTTTCGAGTGCCAATCCAACAGTCTCACAGGGGCATTTCCGTCATTACCCAAATCCCTACAACTCCTTTACATCTCTGACAACGGCTTCACCTCTCTCCCTCCAGATTTCTTCAAGGGCATGACGATGTTACAAGAAGTGAGAATCGACCGCAATCCTTTTCCTCAGTGGCAAATCCCCGACACACTCAAGGACTGCGTGGCATTACAGACATTTTCGGCGCAAAATGTTTCTTTAGTGGGAGAAATTCCTGAATTTTTTGGCAAAGATGGTCCATTCCCAGGTTTGACTACCTTGTCCCTGTGTTTCAATCTACTCGTGGGTGGGTTGCCTTCGAGCATCGCGGGTAGTTCAATAGAGCAGCTATGGGTGAATGGGCAAAAGAGTAATTCTAAGCTTAATGGTACACTTGCTGTGTTACAGAACATGACATCTCTGAAACAAATTTGGGCTCATGGTAATTCCTTTACTGGTCCTATTCCTGATTTGTCGAACCATGATCAATTGTGGGATGTAAGCTTAAGGGATAACCAGTTAACCGGCGTTGTTCCGTCGTCTCTTATGGCTCTTCCTAGTTTGAAAGTTGTGAATTTAACTAATAATTATCTTCAAGGACCAATGCCTAAGTTTAAATCAGGAGTAAGGGTGGATATTGCAGGGATAAATCAGTTTTGCACTACTGAGCCTGGTCAGCCATGTAGTTCTTTGGTGAATGCTTTGTTGTCTGTGACTGAACCTTTTGGTTATCCCTTGAAATTTGCTCAAAGTTGGAAGGGTAACGATCCTTGTGCTGGTGATTGGATGGGGATTGTTTGCACGGGTGGAAATATTTCGGTTGTGAATTTTCAGAACATGGGTCTGTCTGGTACTATTTCTCCTAGTTTTGCTAGCCTCACTACAGTAAAAAGGTTGCTTCTTGCTAACAATAATCTCACTGGTACCATACCTCGTGAGCTTTCTAGTATGCCTCTTCTGCAAGAGCTGGATGTTTCCGATAATCATTTATATGGCGCAGTACCGACGTTTCGGAAAGATGTGGTTCTTAAATTAGGCGGGAATCCTAATATTGGAAGGGATAAACCTTCAGCTCCGCCGGGATCACCCGGCTCGGACTCTGGAGGTAATGGTAAGAAACATAATTCTGCAGTCATTGTCGTAATTGTGGTGGTGGTGGTTGTCATATTACTTGGTGTAGCAATATGGGGATTCATTTGGATCAATCGAAAACGTAAGCATTCAAGCAAAGTTCAAGGTCCGAATGCAATGGTGGTACATCCTCAGCATTCTGGAGACAAAAATCACGTGAAGATCAGTATTGCAGGTGGCAGTGCTGGTGGAGGAGGAACTAACGCACAGATTACCAGTACTAATAATGCAGCAGCTGATGTTCATCTGGTGGAAACTGGTAATATGGTAATTTCAATTCAAGTTTTAAGAGAAGTTACAAACAATTTCAGTGAAGAGAACATACTGGGGAAGGGTGGTTTTGGCACTGTGTATAAAGGAGAATTGCATGACGGGACAAAGATTGCAGTGAAAAGAATGGAATCCGGAATGGTTGGCGAGAAGGGGCTGAACGAGTTCAAGGCTGAAATCGCTGTTCTTACTAAGGTTCGACATAAGCATTTGGTTGCACTCTTGGGGTATTGCTTGGATGGACATGAGAGGCTTCTTGTGTATGAGTACATGCCTCAGGGGACACTTAGCAGGCATCTGTTCAACTGGAAAGATGAAGGGTTAAAGCCACTGGAATGGACAAGAAGGCTTATCATCGCCTTGGATGTTGCTAGAGGAGTTGAATATCTTCATGGTTTGGCCCAACAAATTTTTATTCACAGGGATCTCAAACCATCAAACATTCTGCTTGGAGATGATTTGCGGGCTAAAGTGTCTGACTTTGGTTTGGTTCGGCTCGCCCCAGAAGGAAAAGCCTCATTTGAAACTAGACTTGCTGGAACTTTTGGATATCTGGCACCAGAATATGCAGCAACTGGACGAGTAACAACGAAGGTTGATGTATATAGTTTCGGAGTGATTCTTATGGAGATGGTTACCGGGAGAAAAGCACTTGACGATAGCCAACCTGAAGAGAACTTCCACCTTGTCACATGGTTCCGAAGAATGCTGCTGAACAAGGACTCATTCCGAAAGGCCATTGACCCTGCAATCGATGTGAGTGAGGAAACTCTATCCAGTATCAACACTGTTGCAGAGTTGGCCGGCCACTGCTGCGCTAGGGAGCCGTATCAGCGGCCCGACATGGGACACGCCGTGAACGTGCTAGTGCCTCTTGTTGAGGTGTGGAAGCCTGCAGAAGCAAATGCTGATGACATTAGTGGGATTGACCTTGACATGAGCCTACCACAAGCTCTCCAAAAATGGCGGGCTTTTGAAGGAACGAGCACCTTCACCATGGGCACAGATGCAACTTCATCACTGCTTTCTAGTGCAGATAGTACACAGTCAAGCATACCCCCTAGGCCATTTGGGCTGGGAACTTCCTTTACTTCTTCAGATGCAAGATGA 2805 0.4545 MEKPHVGFGVSFLYRIVLVLSAVLLACSQDADVMGILKNAINGARSLQWSNPDVCKWNHVQCNSAKRVTAIQIGNLNLQGSLPKELSKLAELQRFECQSNSLTGAFPSLPKSLQLLYISDNGFTSLPPDFFKGMTMLQEVRIDRNPFPQWQIPDTLKDCVALQTFSAQNVSLVGEIPEFFGKDGPFPGLTTLSLCFNLLVGGLPSSIAGSSIEQLWVNGQKSNSKLNGTLAVLQNMTSLKQIWAHGNSFTGPIPDLSNHDQLWDVSLRDNQLTGVVPSSLMALPSLKVVNLTNNYLQGPMPKFKSGVRVDIAGINQFCTTEPGQPCSSLVNALLSVTEPFGYPLKFAQSWKGNDPCAGDWMGIVCTGGNISVVNFQNMGLSGTISPSFASLTTVKRLLLANNNLTGTIPRELSSMPLLQELDVSDNHLYGAVPTFRKDVVLKLGGNPNIGRDKPSAPPGSPGSDSGGNGKKHNSAVIVVIVVVVVVILLGVAIWGFIWINRKRKHSSKVQGPNAMVVHPQHSGDKNHVKISIAGGSAGGGGTNAQITSTNNAAADVHLVETGNMVISIQVLREVTNNFSEENILGKGGFGTVYKGELHDGTKIAVKRMESGMVGEKGLNEFKAEIAVLTKVRHKHLVALLGYCLDGHERLLVYEYMPQGTLSRHLFNWKDEGLKPLEWTRRLIIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDLRAKVSDFGLVRLAPEGKASFETRLAGTFGYLAPEYAATGRVTTKVDVYSFGVILMEMVTGRKALDDSQPEENFHLVTWFRRMLLNKDSFRKAIDPAIDVSEETLSSINTVAELAGHCCAREPYQRPDMGHAVNVLVPLVEVWKPAEANADDISGIDLDMSLPQALQKWRAFEGTSTFTMGTDATSSLLSSADSTQSSIPPRPFGLGTSFTSSDAR 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1962 934 MobiDBLite consensus disorder prediction 907 934 - -
Dere13g1962 934 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Dere13g1962 934 FunFam Receptor-like kinase TMK4 28 323 - -
Dere13g1962 934 PANTHER OSJNBA0070M12.3 PROTEIN 15 934 - -
Dere13g1962 934 FunFam receptor protein kinase TMK1 541 655 - -
Dere13g1962 934 CDD STKc_IRAK 584 857 - -
Dere13g1962 934 ProSiteProfiles Protein kinase domain profile. 578 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1962 934 MobiDBLite consensus disorder prediction 446 468 - -
Dere13g1962 934 Pfam Leucine Rich Repeat 112 133 IPR001611 GO:0005515
Dere13g1962 934 FunFam Leucine-rich repeat receptor-like kinase 328 452 - -
Dere13g1962 934 Gene3D Phosphorylase Kinase; domain 1 540 655 - -
Dere13g1962 934 FunFam receptor protein kinase TMK1 656 873 - -
Dere13g1962 934 SMART serkin_6 578 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1962 934 Pfam Protein kinase domain 579 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1962 934 ProSitePatterns Protein kinases ATP-binding region signature. 584 606 IPR017441 GO:0005524
Dere13g1962 934 SUPERFAMILY L domain-like 35 436 - -
Dere13g1962 934 SUPERFAMILY Protein kinase-like (PK-like) 558 862 IPR011009 -
Dere13g1962 934 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672|GO:0006468
Dere13g1962 934 Gene3D Ribonuclease Inhibitor 27 322 IPR032675 -
Dere13g1962 934 Gene3D Transferase(Phosphotransferase) domain 1 656 871 - -
Dere13g1962 934 Gene3D Ribonuclease Inhibitor 328 453 IPR032675 -
Dere13g1962 934 Pfam Leucine rich repeat N-terminal domain 331 365 IPR013210 -
Dere13g1962 934 Pfam Leucine rich repeat N-terminal domain 29 63 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1962 Dere-ChrDere13 26702385 26705697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1962 68 860 Receptor kinase-like Gene Family AT5G07280 30.851 1.82e-86 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Dere13g1962 Pkinase 6.4e-47 CL0016