Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1960 ATGGCTTTCAACATCATCTTCTTCCTCTGCTTCACCTTCTCCATCCTTTCCCACATTCAATTCTCAGTTTCCCAGAGACCCCTCAACTTAACTTCCTTCACAATCTCAGACTCCCCATGGCGTCCAAACCAGAATCGCGTTCTTCTCTCCCTGAATTCCAAGTTCTCTGCTGGCTTCTTCCTCAAATCCTCAAATCTCTTCACTTTCTCCGTTTGGTTCACCAATGTCCCCCAAAACGACACCGCAGTCGTATGGTCTGCAAACCCCAATTCTCCGGTCAACGGCTCTGCCTCCGTCGCCATCACCTCCAAAGGCGAGCTTTTTCTCGATAATACTCTCGTCGTAAACGCTTCGTCTGCTTCCAATTCCACGTCGCTCCTTCTCCACGACGACGGTAATTTGATTTTCGAAAATTGGAAGAGCTTCGATAATCCAACGAACACCATTCTCCCGAACCAAAACATAACAGGAATCAAGCTTCGTTCCAATAATGGGCTTTTCAGATTCGTCAATTCTACGGATCTGATTCTCAATTCTACCTCTGATAAATACTATAACACCCCCAGTCCGTTGGTGAGCATGGACGTCGCTGGCAAGATGAATATGCAAGCTAACTCTTTTCTGACCAGCGATTACGGCGACGATCGGCCTCGGAAAATGGTTCTCGACGATGATGGGAATCTCAGAATCTACAGTTTCTACCCCGAGCGACAAAACCAGTGGGTTGAGGTTTGGATAGCGATTTGGGAATCGTGTACAATCAAAGGCAAATGTGGCCCTAATGCTATATGCTTGCCTTCACTGGGTACAAATACTTCTACTTCATGTGTTTGCCCAGCTGGGTTCAAGCCAAACCAAGGAGGACCACAACAAGGTTGTTCAAGGAAGACCAAGCTTACCAGCAACATCAAGTTTTTGAAGCTGGATTATGTAAACTATACTAGCAACAATCGGGTACATAAATTTGCTAGAAACTTCACAACTTGTGAATCTAATTGCAGTGCAAACCCAAAATGTCTCGGGTTTGGCTTCAAATATGATGGATCTGGTTATTGTTCTTTGCTGGTAGATGAACTCCAAGATGAACTCCAATATGGCTACTGGTCTCCTGGTACAGAGACCTCCCTGTTTCTTAAGGTAGACAAATCCGAATCCGATATATCCAATTTCACTGGGATGACAGAAGTGCTGCAGACATCTTGCCCTGTTCAGATCAGCCTCCCACAGCCGCCTAAAGATTCGAATTCCACAACTCGAAACATCGTCATTATCTGTACCCTTTTTGCTGCTGAGCTCATTTCTGGGGTCGCTTTCTTCTGGTCTTTTCTCAAGAGGTACATCAAGTACAGAGACATGGCTACCACTCTTGGACTCGAGTTCCTTCCCGCCGGTGGCCCAAAACGGTTCACGTATTCCGAGCTCAAAGCCGCCACCAAGGACTTCTCCAACCTCATAGGAAAAGGTGGGTTTGGCGATGTTTACAAAGGGGAGCTGCCGGACCACCGTGTCGTCGCCGTCAAGTGCCTCAAGAATGTCGCCGGTGGCGACGCCGAGTTCTGGGCCGAGGTCACTATCATTGCCAGAATGCACCACCTCAACTTGGTTCGCTTGTGGGGCTTCTGCGCTGAGAAAGGTCAACGAATCTTGGTCTACGAGTATATTCCTGGCGGGTCATTGGATAAATACCTATTTCGTCCTAGTCGGGTCGGATCTAAGGACGGCGAAGATTTTCCGGATTCAGATCATCATCCTGACCAGGGACAAAAGCCCATTCTTGATTGGAATATCCGGTATAGGATTGCTCTCGGAGTAGCTAGATCCATAGCATACTTGCACGAGGAGTGTTTGGAATGGGTCTTACATTGTGATATCAAGCCCGAAAACATTCTATTGGGTGACGATTTCTGTCCAAAAATATCTGATTTTGGATTAGCCAAACTTAGGAAGAAAAAAGATATGGTAACTATGTCCCGAAGGAGAGGAACTCCAGGTTACATGGCTCCAGAATGGATCACAACGGATCCAATCACCTCCAAAGCTGACGTGTACAGCTTTGGGATGGTTTTGCTTGAGCTTGTGAGTGGGGTTAGGAACTTTGAGATTCAAGGGTCTTTCATGCACAGTGAAGAATGGTATTTTCCTGGGTGGGCTTTTGATAAAATGTTTAAAGAGATGAAAACAGAAGACATCCTGGACCGCCAGATTAGGCATTGTTATGATAGTAGGGCCCATTTTGATATGATTAATAGGATGGTTAAGACAGCAATGTGGTGCCTTCAAGATAGGCCAGAGATGAGGCCCGCCATGGGAAAAGTGGCCAAGATGTTGGAAGACACAGTGGAGATTGCTGAACCCAAGAAGCCCACTGTCTTTTTCCTTGGAGATGAATAA 2391 0.4647 MAFNIIFFLCFTFSILSHIQFSVSQRPLNLTSFTISDSPWRPNQNRVLLSLNSKFSAGFFLKSSNLFTFSVWFTNVPQNDTAVVWSANPNSPVNGSASVAITSKGELFLDNTLVVNASSASNSTSLLLHDDGNLIFENWKSFDNPTNTILPNQNITGIKLRSNNGLFRFVNSTDLILNSTSDKYYNTPSPLVSMDVAGKMNMQANSFLTSDYGDDRPRKMVLDDDGNLRIYSFYPERQNQWVEVWIAIWESCTIKGKCGPNAICLPSLGTNTSTSCVCPAGFKPNQGGPQQGCSRKTKLTSNIKFLKLDYVNYTSNNRVHKFARNFTTCESNCSANPKCLGFGFKYDGSGYCSLLVDELQDELQYGYWSPGTETSLFLKVDKSESDISNFTGMTEVLQTSCPVQISLPQPPKDSNSTTRNIVIICTLFAAELISGVAFFWSFLKRYIKYRDMATTLGLEFLPAGGPKRFTYSELKAATKDFSNLIGKGGFGDVYKGELPDHRVVAVKCLKNVAGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEYIPGGSLDKYLFRPSRVGSKDGEDFPDSDHHPDQGQKPILDWNIRYRIALGVARSIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLRKKKDMVTMSRRRGTPGYMAPEWITTDPITSKADVYSFGMVLLELVSGVRNFEIQGSFMHSEEWYFPGWAFDKMFKEMKTEDILDRQIRHCYDSRAHFDMINRMVKTAMWCLQDRPEMRPAMGKVAKMLEDTVEIAEPKKPTVFFLGDE 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1960 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 180 IPR036426 -
Dere13g1960 796 Pfam D-mannose binding lectin 83 156 IPR001480 -
Dere13g1960 796 PIRSF SRK 1 189 IPR024171 GO:0004674
Dere13g1960 796 PIRSF SRK 171 796 IPR024171 GO:0004674
Dere13g1960 796 Gene3D - 40 148 IPR036426 -
Dere13g1960 796 Pfam Protein kinase domain 483 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1960 796 ProSitePatterns Protein kinases ATP-binding region signature. 485 507 IPR017441 GO:0005524
Dere13g1960 796 SUPERFAMILY Protein kinase-like (PK-like) 460 777 IPR011009 -
Dere13g1960 796 Pfam S-locus glycoprotein domain 211 285 IPR000858 GO:0048544
Dere13g1960 796 FunFam S-receptor-like serine/threonine-protein kinase 451 553 - -
Dere13g1960 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Dere13g1960 796 SMART serkin_6 479 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1960 796 ProSiteProfiles Bulb-type lectin domain profile. 33 182 IPR001480 -
Dere13g1960 796 FunFam Serine/threonine-protein kinase 554 787 - -
Dere13g1960 796 Gene3D Phosphorylase Kinase; domain 1 454 553 - -
Dere13g1960 796 SMART blect_4 43 145 IPR001480 -
Dere13g1960 796 ProSiteProfiles Protein kinase domain profile. 479 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1960 796 CDD STKc_IRAK 485 777 - -
Dere13g1960 796 Gene3D Transferase(Phosphotransferase) domain 1 555 788 - -
Dere13g1960 796 ProSiteProfiles PAN/Apple domain profile. 293 381 IPR003609 -
Dere13g1960 796 PANTHER OS07G0415500 PROTEIN 6 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1960 Dere-ChrDere13 26650470 26652860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1960 311 788 Receptor kinase-like Gene Family AT4G18250 32.932 3.09e-75 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Dere13g1960 Pkinase 2.5e-44 CL0016