Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1953 ATGAAGTTCAACATTGCCAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATTGATGATGATGCTAAACTCCGTGCATTTTGGGACAAGAGGATATCACAAGAAGTCAGTGGAGATGCACTGGGGGAGGAGTTTAAGGGCTATGTCTTCAAAATTACTGGAGGCTGTGACAAACAGGGTTTTCCAATGAAGCAGGGAGTGCTAACTCCTGGCCGTGTTCGGCTCTTGCTGCACAGAGGAACCCCTTGCTTCCGTGGTTATGGCAGAAGGAATGGAGAGAGGAGAAGGAAGTCTGTTCGTGGATGCATTGTCAGTCCAGATCTCTCTGTTCTTAACTTGGTTATTGTGAAGAAAGGTGAGAATGACCTCCCAGGATTGACTGACATTGAGAAGCCAAGAATGAGGGGACCAAAAAGGGCTTCAAAAATTAGGAAATTGTTTAATCTTTCTAAGGAGGATGATGTACGCAAATATGTCAACACATACCGCAGAACCTTTACAACCAAAGCTGGCAAGAAGGTCAGCAAAGCTCCCAAAATTCAGAGGCTGGTTACTCCGTTGACTTTGCAAAGGAAGAGGGCAAGGATTGCAGAGAAGAAGAAGAGAATTGCCAAGGCCAAGGCAGAGGCTGCTGAATATCAAAAGCTGCTTGCCAGCCGTTTGAAGGAACAGCGGGAACGCCGCAGCGAGAGCTTGGCTAAGAGGAGATCTAAGCTCTCTGCTGCATCTAAGCCGTCGGTTACAGCTTAA 750 0.4733 MKFNIANPTTGCQKKLEIDDDAKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIAEKKKRIAKAKAEAAEYQKLLASRLKEQRERRSESLAKRRSKLSAASKPSVTA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1953 249 MobiDBLite consensus disorder prediction 222 237 - -
Dere13g1953 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 240 IPR001377 GO:0003735|GO:0005840|GO:0006412
Dere13g1953 249 Coils Coil 189 223 - -
Dere13g1953 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Dere13g1953 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Dere13g1953 249 Gene3D - 133 234 - -
Dere13g1953 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Dere13g1953 249 MobiDBLite consensus disorder prediction 222 249 - -
Dere13g1953 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1953 Dere-ChrDere13 26532626 26535017 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1953 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 70.683 2.31e-118 334