Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1942 ATGGTTTCAAGATCTTATTCAAATCTACTGGAGCTAGCCTCTGGTGAGTCTCCATCATTTGGGTGCATAAACCGTGGGATTCCGCGGATTATGACAGTGGCTGGTTTGATTTCTGATGTTGATAATGACCCAGGGGAGAGCATGAGCTCCGAACCCTCGTCGTCGGTGTCAGTCCACCGTGACCGGATCATAATTGTGGCGAACCAGCTTCCAATCAGGGCTCAGAGAAAGGCAGATGGTAGCAGTAACAATAGAAACTGGCAGTTCAGTTGGGATGAGAATTCACTTCTCCTCCAATTGAAAGATGGGTTAGGTGATGATGATATTGAGGTTATCTATGTTGGGTGTCTTAAGGAAGAAATCCACCCAAATGAACAAGATGAGGTTTCACAAATCCTCCTTGAAAACTTCAAATGTGTCCTTACTTTTCTCCCAGCTGATCTCTTTTCAAGATACTATCATGGGTTTTGCAAGCAGCAGCTATGGCCTTTGTTTCACTACATGCTCCCTCTGTCACCAGACCTTGGTGGTAGGTTCAGTAGGTCACTATGGCAGGCGTATGTCTCAGTGAATAAGATTTTCGCCGATCGGATTATGGAAGTGATTAATCCGGAAGATGATTATGTTTGGATACATGATTATCATCTCATGGTGTTGCCAACATTCTTGAGGAAGAGATTTAACAGAGTGAAGCTTGGGTTCTTCCTGCATAGCCCATTCCCATCATCAGAAATTTACAAGACATTGCCTATTAGGGAAGAGCTATTGAGAGCCCTTTTGAATTCAGATTTGATAGGCTTCCACACGTTTGATTATGCACGCCATTTTCTGTCCTGTTGTAGCCGGATGCTTGGTCTTACCTATGAATCGAAACGGGGTTATATTGGGCTTGAGTATTATGGTAGGACTGTTAGTATAAAAATCCTTCCTGTTGGTATCCACATGGGTCAGCTTCAATCAGTATTGAGCCTTCCTAAAACTGAAGAGAAAGTTGCTGAGCTCATTAAGCAGTTTACGGATCGAGGAAGGATAATGTTACTCGGAGTGGATGACATGGATATCTTTAAGGGAATAAGTTTGAAGCTATTGGCAATGGAGCAGCTTCTCATTCAGCATCCAGAGTGGCAGGGGAAAGTTGTATTGGTCCAAATTGCTAACCCGGCCCGGGGGCGAGGGAAAGATGTGAAGGAAGTGCAAGCTGAGACAAAGGCAACAGTTAAAAGGATTAATGAGATATTTGGGAAACCTGGGTATGATCCTGTCATTCTGATTGAGGACCCACTCAAATTCTGTGAGAAAGTTGCGTACTATGTTGTTGCTGAGTGTTGTCTAGTCACTGCGGTTAGGGATGGAATGAATCTCATACCATATGAATACATAATCAGTCGCCAAGGGAATGAAAAATTGGACAAGGTTTTAGGACTAGCTTCTTCCCCTAAGAAAAGCATGTTGGTTGTCTCTGAGTTCATAGGTTGTTCCCCTTCTTTAAGTGGAGCAATCAGAGTGAACCCATGGAATATCGATGCAGTAGCAGATGCAATGGACTCTGCGCTGGAAATGGCTGATTCAGAGAAACAGCTTAGGCATGAAAAGCATTATAGATATGTTAGTACTCATGATGTCGGGTACTGGGCTCGAAGCTTCTTGCAGGATTTGGAAAGGACTTGTAGTGATCATGTCCGGCGAAGGTGGTGGGGAATTGGGTTTGGATTAAGTTTTAGAGTAGTAGCACTTGATCCAAACTTCAGAAAGCTCTCAATGGAGCACATAGTTTCAGCTTACAAGCGAACAAAAACTCGGGCGATCCTTCTAGATTATGATGGTACACTAATGCCTCAGGCTTCCATTGATAAGAGCCCAACAAGTAAATCTATTGAAATTCTTAACAGCTTGTGTAGAGACAAGAACAACATGGTGTTCGTTGTAAGTGCTAGAAGCCGAACAAAACTTGCTGAATGGTTTTCTCCTTGTGAGAATCTGGGAATTGCAGCTGAGCATGGTTACTTTCTAAGACTGAACCGCGATGCAGAATGGGAAACATGTGGACCTGCAACAGACTGTAGTTGGAAGCAGATTGCTGAGCCAGTGATGAAGCTTTATACCGAAACAACGGATGGATCCACCATTGAAGATAAAGAGACTGCGCTTGTGTGGTCCTATGAGGATGCAGATCCAGATTTCGGATCGTGCCAAGCCAAGGAGCTTCTTGATCATCTTGAAAGTGTTCTTGCAAATGAACCTGTCACTGTCAAGAGTGGCCAGAATATTGTAGAGGTTAAACCACAGGGCGTGAGCAAGGGGCTTGTGGTCAAACGCCTACTTTCGACCATGCGAGAAAATGCAATATCACCTGATTTTGTGCTGTGCATTGGAGATGATCGGTCTGATGAAGACATGTTTGAGGTAATCTCCAGTTCAATGGCTGGTCCTACCATTGCACCCCAGGCTGAAGTATTTGCATGCACGGTTGGCCGAAAGCCAAGCAAAGCCAAGTACTATCTGGATGATACAGCTGAAATTGTGAGATTGATACAGGGTCTAGCTAGTGTTTCAGAACAAAGACCTGGGAAAAAGGATGGTGAATGA 2586 0.4404 MVSRSYSNLLELASGESPSFGCINRGIPRIMTVAGLISDVDNDPGESMSSEPSSSVSVHRDRIIIVANQLPIRAQRKADGSSNNRNWQFSWDENSLLLQLKDGLGDDDIEVIYVGCLKEEIHPNEQDEVSQILLENFKCVLTFLPADLFSRYYHGFCKQQLWPLFHYMLPLSPDLGGRFSRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPKTEEKVAELIKQFTDRGRIMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETKATVKRINEIFGKPGYDPVILIEDPLKFCEKVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKVLGLASSPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMADSEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCSDHVRRRWWGIGFGLSFRVVALDPNFRKLSMEHIVSAYKRTKTRAILLDYDGTLMPQASIDKSPTSKSIEILNSLCRDKNNMVFVVSARSRTKLAEWFSPCENLGIAAEHGYFLRLNRDAEWETCGPATDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWSYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNIVEVKPQGVSKGLVVKRLLSTMRENAISPDFVLCIGDDRSDEDMFEVISSSMAGPTIAPQAEVFACTVGRKPSKAKYYLDDTAEIVRLIQGLASVSEQRPGKKDGE 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1942 861 Gene3D Glycogen Phosphorylase B; 54 319 - -
Dere13g1942 861 CDD GT20_TPS 62 553 IPR001830 GO:0003824|GO:0005992
Dere13g1942 861 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 61 556 - -
Dere13g1942 861 FunFam Alpha,alpha-trehalose-phosphate synthase 321 537 - -
Dere13g1942 861 SUPERFAMILY HAD-like 600 847 IPR036412 -
Dere13g1942 861 Pfam Trehalose-phosphatase 603 837 IPR003337 GO:0003824|GO:0005992
Dere13g1942 861 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 848 IPR001830 GO:0003824|GO:0005992
Dere13g1942 861 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 599 716 - -
Dere13g1942 861 FunFam Trehalose-6-phosphate synthase 10 730 858 - -
Dere13g1942 861 Pfam Glycosyltransferase family 20 62 553 IPR001830 GO:0003824|GO:0005992
Dere13g1942 861 NCBIfam HAD-IIB family hydrolase 602 803 IPR006379 -
Dere13g1942 861 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 319 - -
Dere13g1942 861 NCBIfam trehalose-phosphatase 598 847 IPR003337 GO:0003824|GO:0005992
Dere13g1942 861 Gene3D - 599 715 IPR023214 -
Dere13g1942 861 Gene3D - 729 859 IPR023214 -
Dere13g1942 861 CDD HAD_TPP 601 842 - -
Dere13g1942 861 Gene3D Glycogen Phosphorylase B; 320 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1942 Dere-ChrDere13 26452294 26455804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1942 1 853 Trehalose Biosynthesis Gene Families AT1G68020 82.292 0.0 1484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1942 13 26452294 26455804 Dere13g1942 13 26452294 26455804 ECH