Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1934 ATGGCTGCTTTGCAGAGAGTGGCACAGTCGAGCATGACTACTAGTGTAAGCAGCTATGGCACCTGCAAAGGTGGTGCTGCTGCTATTGAGAAGGCGGTTCCTGAAAAATTCCCAGCTGGTCTGCGGGTTCTCGTTGTGGACGATGACCTCATTACCTTGAGAATCATTGAACAAATGTCTCTTAAGTGTCATTATCGAGTTACCACATGTTCTGAGGCTACTGTTGCTTTGAATATTCTAAGAGAGAGGAAAGGCTGCTTTGATGTGGTGTTGAGTGATGTTCATATGCCAGACATGGATGGGTATAAACTCCTAGAACATGTTGGGCTGGAGATGGATCTTCCCGTTATTATGATGTCTGGTGATGGTAGAACAAGTGCTGTGATGAAGGGAATTAGACATGGGGCTTGTGACTATTTGATTAAGCCTGTTCGTGAGGAAGAATTGAGGAACATATGGCAGCATGTTGTTAGGAAAATGTGGAATGAGAACAAAGAGCATGAAAATTCTGGGAGCTTGGAAGATAATGATCGGAATAAACGAGGAAATGATGATGCTGAATATGCTTCATCTGTAATTGACACAGCAGAAGGAGTAGTTAAAGTGCCAAAAAAGAGGAGCAGTTCAAAAGAAGACGATGATGGTGAATTGGAGAATGACGATCCATCCACATCTAAGAAGCCCCGTGTAGTCTGGTCTGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAACCAACTCGGGCTTGACAAGGCTGTACCAAAGAGAATTCTTGAACTGATGAATGTCCCTGGTTTGACGAGAGAAAATGTTGCTAGTCATCTACAGAAATTTAGGCTTTATTTGAAGAGAATAAGTGGAGTAGCACAGCAACAGAATGGGATGCCAAACACAGTCTCAGGGTCTATGGATCCCAATCTAGGGGGACTTGGAAGATTAGATATCCATGCTCTTGCTGCTGCTGGCCAAGTTCCTCCTCAAACACTAGCAGCCCTTCATGCAGAACTCTTAGGTCGTCCAGCCACTAACATAGTGCCAACAGTTGACCAGACTGCTCTTCTACAAGCTTCCATGCAGGGTTCTAAGCATTCCCCTGCAGAACATGCTGTGGCATATGGTCAGCCTCTTGTAAAATGTCCTTCCAACATTGCCAAGAATTTTCCTCAATCCATCCTTACTGCAGATGATGCATCTTCAGGCTATGGAGCATGGCCGCCGTCTGATACAATTGGTTCAGTGGGACCCAATAGTAATCTTGGAAGGGTAAGTGTTCAGAATAATAACATGCTGATGGATATATTGCAGCACCAGCAAAGGCAGCAGTACCAGCAAACACAACAGCATAAGCTGCAGCAGCAATCACTGATGCATGATCAAAGTCGTTCAATCAATGTTCAACCATCTTGTTTGGTGGTTCCCTCTCAATCTTCAGGCACTTTCCAGGCTAATAGTCCTGCTTCTGTCAACCAGAATTGCAGCTTTCCTAGGAATTCCCTTATGGATTATAGTCTCTTTGCACCTCAATCAAATCATTCTTCACTAAATATTGCTCAATTAACTGGCGGGGATGCAAAAGCAAAAGGTGTTCTTTGTGGGTATATGGCTCCTGGTTCCGTTTCACTTCCAACACCATCTCATTCAGTAAGTGCTAACAATAGTAATATCCAGCAGCTTCACAACTCCTCTTTGACATTTGGTGCTGTGAGACCTTTGCCAGCTCATTCAGCAAATCTGTCTGATACACAAGTTCCCTACGGTGGTACTAAATCTGGTGATGCAATTGATCAAGCACCTGTTAGGAATATTGGATTTGTTGGCCATGGCACCAGTATTCCAAGAGGAGCCAAACATGGAGTTTATGGATAA 1866 0.44 MAALQRVAQSSMTTSVSSYGTCKGGAAAIEKAVPEKFPAGLRVLVVDDDLITLRIIEQMSLKCHYRVTTCSEATVALNILRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDGRTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKMWNENKEHENSGSLEDNDRNKRGNDDAEYASSVIDTAEGVVKVPKKRSSSKEDDDGELENDDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRISGVAQQQNGMPNTVSGSMDPNLGGLGRLDIHALAAAGQVPPQTLAALHAELLGRPATNIVPTVDQTALLQASMQGSKHSPAEHAVAYGQPLVKCPSNIAKNFPQSILTADDASSGYGAWPPSDTIGSVGPNSNLGRVSVQNNNMLMDILQHQQRQQYQQTQQHKLQQQSLMHDQSRSINVQPSCLVVPSQSSGTFQANSPASVNQNCSFPRNSLMDYSLFAPQSNHSSLNIAQLTGGDAKAKGVLCGYMAPGSVSLPTPSHSVSANNSNIQQLHNSSLTFGAVRPLPAHSANLSDTQVPYGGTKSGDAIDQAPVRNIGFVGHGTSIPRGAKHGVYG 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1934 621 PANTHER TWO-COMPONENT RESPONSE REGULATOR 41 433 IPR045279 GO:0009736
Dere13g1934 621 FunFam Two-component response regulator 41 178 - -
Dere13g1934 621 MobiDBLite consensus disorder prediction 199 228 - -
Dere13g1934 621 FunFam Two-component response regulator 223 286 - -
Dere13g1934 621 SUPERFAMILY CheY-like 40 165 IPR011006 -
Dere13g1934 621 CDD REC_typeB_ARR-like 43 157 - -
Dere13g1934 621 SUPERFAMILY Homeodomain-like 224 284 IPR009057 -
Dere13g1934 621 ProSiteProfiles Response regulatory domain profile. 42 157 IPR001789 GO:0000160
Dere13g1934 621 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 283 IPR017930 -
Dere13g1934 621 SMART REC_2 41 153 IPR001789 GO:0000160
Dere13g1934 621 Pfam Myb-like DNA-binding domain 229 277 IPR001005 -
Dere13g1934 621 Gene3D - 41 223 - -
Dere13g1934 621 Gene3D - 224 286 - -
Dere13g1934 621 MobiDBLite consensus disorder prediction 199 213 - -
Dere13g1934 621 NCBIfam myb-like DNA-binding domain, SHAQKYF class 227 280 IPR006447 GO:0003677
Dere13g1934 621 Pfam Response regulator receiver domain 43 152 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1934 Dere-ChrDere13 26282536 26287751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1934 75 341 Response Regulator Gene Family AT3G16857 54.930 1.44e-95 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dere13g1934 Response_reg 6.6e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1934 13 26282536 26287751 Dere13g1934 13 26282536 26287751 ECH